RetrogeneDB ID: | retro_mdom_1339 | ||
Retrocopylocation | Organism: | Opossum (Monodelphis domestica) | |
Coordinates: | 4:62037212..62037475(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YWHAQ | ||
Ensembl ID: | ENSMODG00000014740 | ||
Aliases: | None | ||
Description: | tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide [Source:HGNC Symbol;Acc:12854] |
Percent Identity: | 52.81 % |
Parental protein coverage: | 70.4 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | DYFRYLAEVACGDDRKQTIDNSQGAYQEAF-DISKKEMQPTHPIRLGLALNFSVFYYEILNNPELACTLA |
D.F.Y..E..C.DD..Q.ID..Q..Y.E.F.....KEMQP..PI.LGL.LN.S.F.....NNPELAC..A | |
Retrocopy | DCF*YSVEITCSDDKRQAIDYFQQSY*ETF<SPARKEMQPMLPIQLGLLLNLSEFHCVFFNNPELACI*A |
Parental | KTAFDEAIAELDTLNEDSY |
..A.DEAI.E...LNED.Y | |
Retrocopy | RKASDEAITESNILNEDPY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 819 .36 RPM |
SRP007412_cerebellum | 0 .00 RPM | 912 .77 RPM |
SRP007412_heart | 0 .00 RPM | 307 .80 RPM |
SRP007412_kidney | 0 .00 RPM | 218 .59 RPM |
SRP007412_liver | 0 .00 RPM | 78 .54 RPM |
SRP007412_testis | 0 .00 RPM | 368 .90 RPM |