RetrogeneDB ID: | retro_meug_605 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold1451:6693..7179(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NSFL1C | ||
Ensembl ID: | ENSMEUG00000003940 | ||
Aliases: | None | ||
Description: | NSFL1 (p97) cofactor (p47) [Source:HGNC Symbol;Acc:15912] |
Percent Identity: | 68.29 % |
Parental protein coverage: | 50.16 % |
Number of stop codons detected: | 6 |
Number of frameshifts detected | 2 |
Parental | GAAPEEE---SAYVAGERRQFSGQDVHIVLKLWKSGFSLDSGELRSYQDPSNA-QFLESIRRGEVPTELR |
GAA.EEE....AYVAGER.Q.SGQDVHI.LKLW.S..S...GE.RSYQDPSN...FLESI.R.E..TE.. | |
Retrocopy | GAASEEE*TVPAYVAGER*QTSGQDVHIILKLWRS*VSINNGEWRSYQDPSNI<HFLESICRSEAFTEV* |
Parental | RLSRGGQVNLDMEDHRDEDFVKPKGTFKAFTGE-GQKLGSTTPQVLNTSSPAQQAENEAKASSSIAIDES |
RLS.GGQVNLDME...DEDF.KP..TFKAF....GQKLG..TPQ.LNTSSP.Q.AEN..KA.SSI.ID.S | |
Retrocopy | RLSHGGQVNLDMEEYQDEDFLKPMETFKAFIDQ>GQKLGNATPQPLNTSSPTQ*AENDDKANSSITIDKS |
Parental | EPTTNIQIRLADGGRLVQKFNHRH |
E.TTN.QI.LADGG.LV.KFN..H | |
Retrocopy | ELTTNLQIWLADGGKLV*KFNLHH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Homo sapiens | ENSG00000088833 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000013539 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000003940 | 2 retrocopies |
retro_meug_1890, retro_meug_605 ,
|
Macaca mulatta | ENSMMUG00000015994 | 1 retrocopy | |
Mus musculus | ENSMUSG00000027455 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000009341 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000002630 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000010851 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000013164 | 1 retrocopy |