RetrogeneDB ID: | retro_mmul_2337 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 8:50016466..50017140(-) | ||
Located in intron of: | ENSMMUG00000013149 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NSFL1C | ||
Ensembl ID: | ENSMMUG00000015994 | ||
Aliases: | None | ||
Description: | NSFL1 cofactor p47 [Source:RefSeq peptide;Acc:NP_001253592] |
Percent Identity: | 83.41 % |
Parental protein coverage: | 61.29 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | ETSKPRPFAGGGYRLGAAPEEESAYVAGEKRQHSSQDVHVVLKLWKSGFSLDNGELRSYQDPSNAQFLES |
ETS.PRPFAGGGY.LGAAP.EESAYVAG.KRQHS.QDVHVVLKL.KSGFSLDNGELRSYQDPS.AQFLES | |
Retrocopy | ETSTPRPFAGGGYGLGAAPKEESAYVAG*KRQHSHQDVHVVLKLYKSGFSLDNGELRSYQDPSDAQFLES |
Parental | IRRGEVPAELRRLAHGGQVNLDMEDHRDEDFVKPKGAFKAFTGEGQKLGSTAPQVLSTSSPAQQAENEAK |
I.RGEVPAEL.RLAH.GQ.NLDMEDHRDEDF.K.KGAF...TGEGQK..STAPQVLST.SP.Q.AENEAK | |
Retrocopy | IHRGEVPAELWRLAHSGQANLDMEDHRDEDFMKSKGAF---TGEGQKPSSTAPQVLSTISPVQLAENEAK |
Parental | ASSSILIDESEPTTNIQIRLADGGRLVQKFNHSHR-ISDIRLFIVDARPAMAATSFILMTTFPNKELADE |
ASSSILI..SE.TTNIQI.LADG.RLVQKFN.SHR.IS.I.LFIVDA.PA.AATSFIL.TTFPNKEL.DE | |
Retrocopy | ASSSILIVKSETTTNIQIWLADGERLVQKFNYSHR<ISNIQLFIVDAWPATAATSFILTTTFPNKELVDE |
Parental | SQTLKEANLLNAVIVQRLT |
S.TLKEANLLNA.I.QR.T | |
Retrocopy | SWTLKEANLLNAAIMQR*T |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .22 RPM | 48 .41 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 65 .45 RPM |
SRP007412_cerebellum | 0 .06 RPM | 48 .43 RPM |
SRP007412_heart | 0 .12 RPM | 42 .57 RPM |
SRP007412_kidney | 0 .23 RPM | 40 .73 RPM |
SRP007412_liver | 0 .59 RPM | 33 .88 RPM |
SRP007412_testis | 0 .15 RPM | 50 .21 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Homo sapiens | ENSG00000088833 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000013539 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000003940 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000006487 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000015994 | 1 retrocopy |
retro_mmul_2337 ,
|
Mus musculus | ENSMUSG00000027455 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000009341 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000002630 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000010851 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000013164 | 1 retrocopy |