RetrogeneDB ID: | retro_mmus_2565 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 5:49552256..49553267(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000083477 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Nsfl1c | ||
Ensembl ID: | ENSMUSG00000027455 | ||
Aliases: | Nsfl1c, Munc-18c, Stxbp3a, p47 | ||
Description: | NSFL1 (p97) cofactor (p47) [Source:MGI Symbol;Acc:MGI:3042273] |
Percent Identity: | 93.47 % |
Parental protein coverage: | 91.08 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | LQIALASFYEDGGDEDIVTISQATPSSVSRGTAPSDNRVTSFRDLIHDQDEEEEEEEGQRFYAGGSERSG |
..IALASFYEDGGDEDIVTISQATPSSVSRGTAPSDNRVTSFRDL.HD.........GQRFYAGGSERSG | |
Retrocopy | IKIALASFYEDGGDEDIVTISQATPSSVSRGTAPSDNRVTSFRDLFHDXXXXXXXXXGQRFYAGGSERSG |
Parental | QQIVGPPRKKSPNELVDDLFKGAKEHGAVAVERVTKSPGETSKPRPFAGGGYRLGAAPEEESAYVAGERR |
QQIVGPPRKKSPNELVDDLFKGAKEHGAVAVERVTKSPGETSKPRPFAGGGYRLGAA.EEESAYVAGERR | |
Retrocopy | QQIVGPPRKKSPNELVDDLFKGAKEHGAVAVERVTKSPGETSKPRPFAGGGYRLGAALEEESAYVAGERR |
Parental | RHSGQDVHVVLKLWKTGFSLDNGDLRSYQDPSNAQFLESIRRGEVPAELRRLAHGGQVNLDMEDHRDEDF |
.HSGQDVHVVLKLWKTGFSLDNGDLRSYQDPSNA.FLESIRRGEVPAEL.RLAHGGQVNLDMEDHRDEDF | |
Retrocopy | WHSGQDVHVVLKLWKTGFSLDNGDLRSYQDPSNAPFLESIRRGEVPAELQRLAHGGQVNLDMEDHRDEDF |
Parental | VKPKGAFKAFTGEGQKLGSTAPQVLNTSSPAQQAENEAKASSSILINEAEPTTNIQIRLADGGRLVQKFN |
.KPKGAFKAFTG.GQKL.S.APQVLNTSSPAQQAENEAKASSSILINEAEPTT.IQIRLADG.RLVQKFN | |
Retrocopy | MKPKGAFKAFTGKGQKLSSMAPQVLNTSSPAQQAENEAKASSSILINEAEPTTDIQIRLADGERLVQKFN |
Parental | HSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIVQRLT |
HSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIVQRLT | |
Retrocopy | HSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIVQRLT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .14 RPM | 45 .25 RPM |
SRP007412_cerebellum | 0 .13 RPM | 59 .18 RPM |
SRP007412_heart | 0 .12 RPM | 48 .16 RPM |
SRP007412_kidney | 0 .27 RPM | 58 .71 RPM |
SRP007412_liver | 0 .08 RPM | 32 .66 RPM |
SRP007412_testis | 0 .14 RPM | 20 .35 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Homo sapiens | ENSG00000088833 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000013539 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000003940 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000015994 | 1 retrocopy | |
Mus musculus | ENSMUSG00000020634 | 1 retrocopy | |
Mus musculus | ENSMUSG00000027455 | 1 retrocopy |
retro_mmus_2565 ,
|
Nomascus leucogenys | ENSNLEG00000009341 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000002630 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000010851 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000013164 | 1 retrocopy |