RetrogeneDB ID: | retro_ogar_1144 | ||
Retrocopylocation | Organism: | Bushbaby (Otolemur garnettii) | |
Coordinates: | GL873536.1:29581487..29582098(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NSFL1C | ||
Ensembl ID: | ENSOGAG00000002630 | ||
Aliases: | None | ||
Description: | NSFL1 (p97) cofactor (p47) [Source:HGNC Symbol;Acc:15912] |
Percent Identity: | 63.81 % |
Parental protein coverage: | 55.68 % |
Number of stop codons detected: | 6 |
Number of frameshifts detected | 4 |
Parental | FAG-GGYRLGAAPEEESAYVAGERKQHSSQDVHVVLKLWKSGFSLDNGELRSYQDPSNAQFLESI-RRGE |
FAG.GGY.LGAAPE.ES...AGER..HSS.D.H.....W.SGF.LD.GELR.YQDPSNAQFLESI..R.E | |
Retrocopy | FAG<GGYCLGAAPEGESTIAAGERRLHSS*DFHTAWAVW*SGFRLDSGELRNYQDPSNAQFLESI<PRRE |
Parental | VPAELRRLAHGGQVNLDMEDHRDEDFVKPKGAFKAFTGEGQKLGST-APQVLNTSSPAQQAENEAKASSS |
V.AEL.R.AH.GQV..DME....EDF.KP.GAF.AFTGEG.KLGST..PQ.L.TS.PAQQA.N.AK.SSS | |
Retrocopy | VSAELQRSAHTGQVGMDMEAQWEEDFMKPTGAFRAFTGEG*KLGST<GPQLLCTSFPAQQA*NKAKSSSS |
Parental | ILINESEPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDA-RPAMAATSFVLMTTFPNKELADESQTL |
IL...SEP..NIQI.LAD.G.L.Q.FNHS...SDI.L..V.A..PA.AAT.F.L.TTFP......E...L | |
Retrocopy | IL-TKSEPSANIQIQLADSGELEQSFNHSGGVSDI*LSTVNA<QPATAATHFILITTFPKS*TLNEASWL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Homo sapiens | ENSG00000088833 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000013539 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000003940 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000015994 | 1 retrocopy | |
Mus musculus | ENSMUSG00000027455 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000009341 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000000025 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000002630 | 2 retrocopies |
retro_ogar_1144 , retro_ogar_1609,
|
Pongo abelii | ENSPPYG00000010851 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000013164 | 1 retrocopy |