RetrogeneDB ID: | retro_meug_908 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold227598:411..1365(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP5B | ||
Ensembl ID: | ENSMEUG00000002875 | ||
Aliases: | None | ||
Description: | ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide [Source:HGNC Symbol;Acc:830] |
Percent Identity: | 96.23 % |
Parental protein coverage: | 60.23 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | ETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGA |
ETLG.IMNVIGEPIDERGP.KTKQFAAIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGA | |
Retrocopy | ETLGSIMNVIGEPIDERGPSKTKQFAAIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGA |
Parental | GVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDTTSKVALVYGQMNEPPGA |
GV.K.VLIMELIN.VAK.HG.YSVFAGVGERTR.GNDLYHEMIESGVINLKDTTSKVALVYGQMNEPPGA | |
Retrocopy | GVRKVVLIMELINSVAKVHGSYSVFAGVGERTRDGNDLYHEMIESGVINLKDTTSKVALVYGQMNEPPGA |
Parental | RARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITT |
RA.VALT.LTVAEYFRD.EGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITT | |
Retrocopy | RAQVALTDLTVAEYFRD*EGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITT |
Parental | TKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIVGNEHY |
TKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIVGNEHY | |
Retrocopy | TKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIVGNEHY |
Parental | DVARGVQKILHDYKSLQDIIAILGMDELSEEDKLTVSR |
DVARGVQKIL.DYKSLQDIIAILGMDELSEEDKLTVSR | |
Retrocopy | DVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000016752 | 1 retrocopy | |
Bos taurus | ENSBTAG00000013315 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000005350 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000033571 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000011289 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000010208 | 1 retrocopy | |
Homo sapiens | ENSG00000110955 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000011596 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000002875 | 6 retrocopies | |
Microcebus murinus | ENSMICG00000001084 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000001027 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000004668 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000005107 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000000405 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000009962 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000002144 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000004025 | 2 retrocopies |