Parental gene:

ATP5B, ENSDNOG00000011289

Aliases:None
Description:ATP synthase subunit beta [Source:UniProtKB/TrEMBL;Acc:Q0QEP6]
Organism:Armadillo (Dasypus novemcinctus)
Coordinates:GeneScaffold_6054:165507..171644(-)


>ENSDNOG00000011289
ATGTTGGGGCTGGTAGGTCGTGTGGCCTCAGCCTCGGCCTCCGGGGCCTTGCGGGGACTCAACCCTTCAGCATCTCTGCC
CCAAGTCCAGCTTTTAGTGCGGGCCGCCCCGGCAGCGCTCCATCCTGCCAGAGACTATGCGGCACAAACATCTCCTTCGC
CGAAGGCAGGCGCCGCCACCGGACGCATCGTCGCGGTCATTGGTGCAGTGGTGGATGTCCAGTTTGATGAGGGCCTTCCA
CCCATTTTAAATGCCCTGGAAGTGCAGGGCAGGGACACCAGGCTGGTTTTGGAGGTGGCCCAGCATTTGGGTGAAAGCAC
AGTGAGGACCATTGCTATGGATGGTACTGAAGGCTTGGTTAGAGGTCAGAAAGTTCTGGATTCTGGTGCTCCAATCAAAA
TTCCTGTTGGTCCTGAGACCTTAGGCAGAATCATGAATGTCATTGGAGAACCTATTGATGAGAGAGGTCCTATCAAAACC
AAACAATTTGCTGCTATTCATGCTGAGGCTCCTGAGTTCATGGAGATGAGCGTGGAACAAGAAATTCTGGTTACTGGCAT
CAAGGTTGTGGATCTGCTGGCTCCCTATGCCAAGGGGGGAAAAATTGGACTCTTTGGTGGTGCTGGAGTTGGTAAGACAG
TACTGATCATGGAGTTAATCAACAACGTTGCCAAAGCCCATGGTGGTTACTCTGTGTTTGCTGGTGTTGGTGAGAGGACC
CGCGAGGGCAATGATTTGTACCATGAAATGATTGAGTCTGGTGTTATCAACTTAAAAGATGCTACCTCCAAGGTAGCCCT
GGTGTACGGTCAAATGAATGAACCACCTGGTGCCCGTGCCCGTGTGGCTCTGACTGGACTGACTGTGGCTGAATACTTCA
GAGACCAAGAAGGTCAAGATGTCCTGCTCTTTATCGATAACATCTTTCGCTTCACTCAGGCTGGCTCAGAGGTGTCTGCT
TTATTGGGCAGAATCCCTTCTGCTGTGGGCTATCAGCCTACACTGGCCACTGACATGGGTACCATGCAGGAAAGAATTAC
CACCACAAAGAAGGGATCTATTACCTCTGTACAGGCTATCTATGTGCCTGCTGATGACCTGACTGACCCTGCCCCTGCCA
CTACCTTTGCCCATTTGGATGCTACCACTGTACTGTCCCGTGCTATTGCTGAGCTGGGCATCTATCCAGCTGTGGATCCT
CTGGATTCCACCTCTCGCATCATGGATCCCAACATTGTTGGCAGTGAGCATTATGATGTTGCCCGTGGGGTGCAAAAAAT
CCTCCAGGATTACAAATCCCTTCAGGACATCATTGCAATCTTGGGTATGGATGAACTTTCTGAGGAAGACAAGTTGACTG
TGTCCCGTGCACGGAAAATACAGCGTTTCTTGTCCCAGCCATTCCAGGTTGCCGAGGTCTTCACAGGTCACATGGGGAAG
TTGGTACCCCTGAAAGAGACCATTAAAGGATTCCAGCAGATTTTGGCAGGTGAATATGACCATCTTCCAGAACAGGCCTT
CTATATGGTGGGACCCATCGAAGAAGCTGTGGCAAAAGCTGATAAGCTGGCTGAAGAGCATTCATGA

Library Parental gene expression (RPM)
SRP012922_ascending_colon 1924 .65 RPM
SRP012922_cerebellum 805 .16 RPM
SRP012922_heart 2616 .15 RPM
SRP012922_kidney 1516 .28 RPM
SRP012922_liver 815 .68 RPM
SRP012922_lung 395 .56 RPM
SRP012922_quadricep_muscle 2514 .05 RPM
SRP012922_spleen 445 .71 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000016752 ortholog_one2one 1 retrogene
retro_acar_181,
Bos taurus ENSBTAG00000013315 ortholog_one2one 1 retrogene
retro_btau_1264,
Choloepus hoffmanni ENSCHOG00000005350 ortholog_one2one 1 retrogene
retro_chof_1544,
Callithrix jacchus ENSCJAG00000033571 ortholog_one2one 2 retrogenes
retro_cjac_1488, retro_cjac_928,
Echinops telfairi ENSETEG00000010208 ortholog_one2many 1 retrogene
retro_etel_2162,
Homo sapiens ENSG00000110955 ortholog_one2one 1 retrogene
retro_hsap_2128,
Gorilla gorilla ENSGGOG00000011596 ortholog_one2one 1 retrogene
retro_ggor_1648,
Macropus eugenii ENSMEUG00000002875 ortholog_one2one 6 retrogenes
retro_meug_1416, retro_meug_1608, retro_meug_411, retro_meug_430, retro_meug_685, retro_meug_908,
Microcebus murinus ENSMICG00000001084 ortholog_one2one 1 retrogene
retro_mmur_495,
Macaca mulatta ENSMMUG00000001027 ortholog_one2many 1 retrogene
retro_mmul_103,
Pongo abelii ENSPPYG00000004668 ortholog_one2one 2 retrogenes
retro_pabe_1921, retro_pabe_2032,
Pan troglodytes ENSPTRG00000005107 ortholog_one2one 1 retrogene
retro_ptro_1557,
Sus scrofa ENSSSCG00000000405 ortholog_one2one 1 retrogene
retro_sscr_453,
Tarsius syrichta ENSTSYG00000009962 ortholog_one2one 1 retrogene
retro_tsyr_644,
Tursiops truncatus ENSTTRG00000002144 ortholog_one2one 1 retrogene
retro_ttru_371,
Vicugna pacos ENSVPAG00000004025 ortholog_one2one 2 retrogenes
retro_vpac_405, retro_vpac_562,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_dnov_361 76.65 62.50
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Download FASTA sequences of all ENSDNOG00000011289 retrocopies