RetrogeneDB ID: retro_mluc_1263

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429810:1929774..1930193(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: NUDT5
• Ensembl ID: ENSMLUG00000010453
• Aliases: None
• Description: None

Sequence

>retro_mluc_1263
TGCATCCATCCGGCGAAGCGGCTCTGACCGCCCGCGGGGGGCTGCCGTCTAGAAGCCCCGCAGCTGTGACAGGCGGTAAC
CAGCACCCAGAAACAGCTGCTCCTCGGAAGGTGAAGGGAGAAAGCAACATCGAGGTGATGTTGCTGAATCTCCAGCTGTA
GGTGTGGATCCGGGTTTGTCAAACTGTACCACACACATCATGACAGGAACTGTTAGTGGAGATGAGACTGAAAATGGCAG
ACCTAAGCCAAAGCCAGGGGCTGGAGAATTTGGGAAAGTCATTTCTTTACCAGAGAATCACCTGCTGCAGAGGCTGGTGC
TCCGGGGGCCGAAGACCATTTGACAGCGGGTGTCAGAGTCTATTCCATGCCCTGGTGCTGAAACATACAGACATGAAGTT
CTTTTAAGTGCCCTTCCTG

Alignment

ORF - retro_mluc_1263 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 54.79 %
• Parental protein coverage: 68.93 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 4

Retrocopy - Parental Gene Alignment:

Parental  CIILVKQFRPPMGSYCLEFP-AGLIDDNESPEAAALRELEEETG-YKGDVAECSPATCMDPGLSNCTTHI
          CI...K...PP.G...LE.P.A.....N..PE.AA.R....E.....GDVAE.SPA...DPGLSNCTTHI
Retrocopy CIHPAKRL*PPAGGCRLEAP<AAVTGGNQHPETAAPRKVKGESN<HRGDVAE-SPAVGVDPGLSNCTTHI

Parental  VTVTINGDEAENVRPKPNPGDGEFVEVLSLPKNDLMKRL-EALVTEEHLTVDARVYS-YALALKHANTKP
          .T.T..GDE.EN.RPKP.PG.GEF..V.SLP.N.L..RL..A...E.HLT...RVYS..AL.LKH...K.
Retrocopy MTGTVSGDETENGRPKPKPGAGEFGKVISLPENHLLQRL<GAPGAEDHLTAGVRVYS<HALVLKHTDMKF

Parental  FEVPFL
          F.VPFL
Retrocopy F*VPFL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1263 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 18 parental genes, and 24 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000019509	2 retrocopies	retro_btau_1326, retro_btau_1438,
Canis familiaris	ENSCAFG00000004794	2 retrocopies	retro_cfam_435, retro_cfam_612,
Equus caballus	ENSECAG00000023658	1 retrocopy	retro_ecab_647,
Echinops telfairi	ENSETEG00000006403	1 retrocopy	retro_etel_946,
Felis catus	ENSFCAG00000025093	1 retrocopy	retro_fcat_350,
Homo sapiens	ENSG00000165609	1 retrocopy	retro_hsap_3580,
Gorilla gorilla	ENSGGOG00000006325	1 retrocopy	retro_ggor_2415,
Loxodonta africana	ENSLAFG00000012052	1 retrocopy	retro_lafr_226,
Myotis lucifugus	ENSMLUG00000010453	2 retrocopies	retro_mluc_1263 , retro_mluc_2073,
Macaca mulatta	ENSMMUG00000017141	1 retrocopy	retro_mmul_1828,
Nomascus leucogenys	ENSNLEG00000012298	1 retrocopy	retro_nleu_2838,
Oryctolagus cuniculus	ENSOCUG00000009308	1 retrocopy	retro_ocun_862,
Otolemur garnettii	ENSOGAG00000005816	2 retrocopies	retro_ogar_2071, retro_ogar_2988,
Pongo abelii	ENSPPYG00000002091	2 retrocopies	retro_pabe_2949, retro_pabe_3040,
Pan troglodytes	ENSPTRG00000002294	1 retrocopy	retro_ptro_2427,
Rattus norvegicus	ENSRNOG00000017741	1 retrocopy	retro_rnor_1672,
Sus scrofa	ENSSSCG00000011113	1 retrocopy	retro_sscr_143,
Tursiops truncatus	ENSTTRG00000007394	2 retrocopies	retro_ttru_209, retro_ttru_495,