RetrogeneDB ID: retro_mluc_1499

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429850:1502..3440(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000012029
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: DDX5
• Ensembl ID: ENSMLUG00000009496
• Aliases: None
• Description: None

Sequence

>retro_mluc_1499
CCCCGCAAGGCTTCACTATAGCCAAAGCCTCCACCAGTGAATCTTCCCACCCGATTCTCTCCACTTCGTTCCCCGCCAAC
CGCAATCATTGACGCCATGTCGGGCTATTCAAGTGACCGAGACCACGGCCGGGATCGAGGGTTTGGTGCACCTCGATTTG
GAGGAAGAAGGGCAGGGCCTCTATCAGGAAAGAAGTTTGGAAAACCTGGGGAGAAACTAGTTAAAAAGCAGTGGAATCTT
GATGAGCTGCCCAAATTTGAGAAGAATTTTTACCAAGAACACCCTGATTTGTCCAGGCGCACAGCGCAAGAAGTAGAGAC
ATACAGAAGAAGCAAGGAAATTACAGTTAGAGGACACAACTGCCCAAAGCCCGTTCTGAATTTTTACGAAGCAAACTTCC
CTGCAAACATCATGGATGCAATTGCAAGACAGAACTTTACTGAACCCACTGCTATTCAAGCTCAGGGATGGCCAGTTGCC
CTAAGTGGATTGGATATGGTTGGAGTAGCACAGACTGGATCTGGGAAAACACTGTCTTATTTGCTGCCTGCCATTGTCCA
CATCAATCATCAGCCGTTCCTAGAGAGAGGTGATGGACCTATTTGCTTGGTGCTGGCACCAACTCGGGAACTGGCCCAGC
AGGTGCAGCAAGTGGCTGCTGAATACTGTAGAGCATGCCGATTGAAGTCTACGTGCGTCTATGGTGGTGCTCCCAAGGGA
CCACAAATACGAGATTTGGAGAGAGGTGTGGAGATCTGTATTGCAACACCTGGAAGACTGATTGACTTTTTAGAGTGTGG
AAAAACAAATCTGAGACGAACCACCTACCTTGTCCTTGATGAAGCAGATAGAATGCTTGATATGGGCTTCGAACCCCAAA
TAAGAAAGATTGTGGACCAGATAAGGCCTGACAGGCAAACCCTAATGTGGAGTGCAACTTGGCCAAAAGAAGTAAGACAG
CTTGCTGAAGATTTCCTGAAAGACTATATTCATATAAACATTGGCGCACTGGAACTGAGTGCAAACCACAACATTCTTCA
GATTGTGGATGTGTGTCATGATGTAGAAAAGGATGAAAAACTTATTCGTCTGATGGAAGAGATCATGAGTGAGAAGGAGA
ATAAAACCATTGTCTTTGTTGAAACCAAAAGAAGATGTGATGAACTTACTAGAAAAATGAGGAGCGACGGGTGGCCTGCC
ATGGCTATTCATGGTGACAAGAGTCAACAGGAACGTGATTGGGTTCTAAGTGAATTCAAACATGGAAAAGCTCCTATTCT
GATTGCTACGGATGTGGCTTCCAGAGGGCTAGATGTGGAAGATGTGAAATTTGTCATCAATTATGACTACCCTAACTCCT
CAGAGGATTATATTCATCGAATTGGAAGAACTGCTCGCAGTACCAAAACAGGCACAGCATACACTTTCTTTACACCTAAT
AATATAAAGCAAGCGAGCGACCTTATCTCTGTGCTTCGTGAAGCTAATCAAGCAGTCAATCCCAAATTGCTTCAGTTGGT
TGAAGACAGAGGTTCAGGTCGTTCCAGGGGTAGAGGAGGCATGAAGGATGACCGTCGGGACAGATACTCTGCAGGCAAAA
GGGGTGGATTTAATACCTTTAGAGACAGGGAAAATTATGACAGAGGTTACTCTAGTCTGCTTAAGAGAGATTTTGGGGCA
AAGACCCAGAATGGTGTTTACAGTGCGACAAATTACACCAATGGGAGCTTTGGAAGTAATTTTGTGTCTGCTGGTATACA
GACCAGTTTTAGGACTGGTAATCCAACAGGGACTTACCAGACTGGTTATGATAGCACTCAGCAATATGGAAGTAATGTTC
CAAATATGCACAATGGTATGAACCAACAGGCATATGCACATCCTGCTACTGCAGCTGCACCTATGATTGGCTATCCAATG
CCAACAGGATATTCTCAA

Alignment

ORF - retro_mluc_1499 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 96.9 %
• Parental protein coverage: 96.27 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  PRKASLSPKPPPATRRTRFSPLRSPPTAIIDAMSGYSSDRDRGRDRGFGAPRFGGSRAGPLSGKKFGNPG
          PRKASL.PKPPP....TRFSPLRSPPTAIIDAMSGYSSDRD.GRDRGFGAPRFGG.RAGPLSGKKFG.PG
Retrocopy PRKASL*PKPPPVNLPTRFSPLRSPPTAIIDAMSGYSSDRDHGRDRGFGAPRFGGRRAGPLSGKKFGKPG

Parental  EKLVKKKWNLDELPKFEKNFYQEHPDLARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANIMDV
          EKLVKK.WNLDELPKFEKNFYQEHPDL.RRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANIMD.
Retrocopy EKLVKKQWNLDELPKFEKNFYQEHPDLSRRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANIMDA

Parental  IARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRE
          IARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRE
Retrocopy IARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRE

Parental  LAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLD
          LAQQVQQVAAEYCRACRLKSTC.YGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLD
Retrocopy LAQQVQQVAAEYCRACRLKSTCVYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLD

Parental  EADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVD
          EADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVD
Retrocopy EADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVD

Parental  VCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFK
          VCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRKMR.DGWPAM.IHGDKSQQERDWVL.EFK
Retrocopy VCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRKMRSDGWPAMAIHGDKSQQERDWVLSEFK

Parental  HGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLIS
          HGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQ.SDLIS
Retrocopy HGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQASDLIS

Parental  VLREANQAINPKLLQLVEDRGSGRSRGRGGMKDDRRDRYSAGKRGGFNTFRDRENYDRGYSSLLKRDFGA
          VLREANQA.NPKLLQLVEDRGSGRSRGRGGMKDDRRDRYSAGKRGGFNTFRDRENYDRGYSSLLKRDFGA
Retrocopy VLREANQAVNPKLLQLVEDRGSGRSRGRGGMKDDRRDRYSAGKRGGFNTFRDRENYDRGYSSLLKRDFGA

Parental  KTQNGVYSAANYTNGSFGSNFVSAGIQTSFRTGNPTGTYQNGYDSTQQYGSNVPNMHNGMNQQAYAYPAT
          KTQNGVYSA.NYTNGSFGSNFVSAGIQTSFRTGNPTGTYQ.GYDSTQQYGSNVPNMHNGMNQQAYA.PAT
Retrocopy KTQNGVYSATNYTNGSFGSNFVSAGIQTSFRTGNPTGTYQTGYDSTQQYGSNVPNMHNGMNQQAYAHPAT

Parental  AAAPMIGYPMPTGYSQ
          AAAPMIGYPMPTGYSQ
Retrocopy AAAPMIGYPMPTGYSQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1499 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 10 parental genes, and 16 retrocopies.

Species	Parental gene accession	Retrocopies number
Echinops telfairi	ENSETEG00000019950	1 retrocopy	retro_etel_1009,
Felis catus	ENSFCAG00000003512	1 retrocopy	retro_fcat_172,
Myotis lucifugus	ENSMLUG00000009496	4 retrocopies	retro_mluc_1136, retro_mluc_1499 , retro_mluc_1845, retro_mluc_2208,
Monodelphis domestica	ENSMODG00000003743	4 retrocopies	retro_mdom_1519, retro_mdom_1520, retro_mdom_1955, retro_mdom_1956,
Mus musculus	ENSMUSG00000020719	1 retrocopy	retro_mmus_788,
Pteropus vampyrus	ENSPVAG00000001932	1 retrocopy	retro_pvam_1267,
Rattus norvegicus	ENSRNOG00000030680	1 retrocopy	retro_rnor_1277,
Tupaia belangeri	ENSTBEG00000009490	1 retrocopy	retro_tbel_4260,
Tarsius syrichta	ENSTSYG00000012149	1 retrocopy	retro_tsyr_1269,
Tursiops truncatus	ENSTTRG00000008793	1 retrocopy	retro_ttru_1662,