RetrogeneDB ID: | retro_tsyr_1269 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_373259:36..956(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DDX5 | ||
Ensembl ID: | ENSTSYG00000012149 | ||
Aliases: | None | ||
Description: | DEAD (Asp-Glu-Ala-Asp) box helicase 5 [Source:HGNC Symbol;Acc:2746] |
Percent Identity: | 89.35 % |
Parental protein coverage: | 50.24 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | GVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGA |
G.A..G.....SYL.PAIVHINHQPFLERGDGPICLVLAPT.ELAQQVQQV..E.CRACRLKSTCIYGGA | |
Retrocopy | GLAMVGVAQ-FSYLPPAIVHINHQPFLERGDGPICLVLAPTQELAQQVQQVVVEDCRACRLKSTCIYGGA |
Parental | PKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQT |
PKG.QIRDLERGVEICIATPGRLIDFLECGKTNLRRT.YLVLDEADRMLDMGFEPQIRKIVDQIRPDRQT | |
Retrocopy | PKGSQIRDLERGVEICIATPGRLIDFLECGKTNLRRTLYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQT |
Parental | LMWSATWP-KEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKT |
LM.SATWP.KE.RQLAEDFLKDYIH.N.GALELSANHNILQIVDV.HDVE.DEK.IRLMEEIMSE.E.KT | |
Retrocopy | LM*SATWP<KEGRQLAEDFLKDYIHMNTGALELSANHNILQIVDVYHDVENDEKRIRLMEEIMSE-ESKT |
Parental | IVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVI |
I.FVETKRRCDE.TRKMRRDG.PAMGIHGDKSQQERDWVLNEFKHGK.PILIATDV.SRGLDVEDVKFVI | |
Retrocopy | IAFVETKRRCDEFTRKMRRDG*PAMGIHGDKSQQERDWVLNEFKHGKTPILIATDVTSRGLDVEDVKFVI |
Parental | NYDYPNSSKDYIHRIGRTARSTKTGTAYTF |
NYDYPNSS.DYIH.IGRTARS.KTGTAYTF | |
Retrocopy | NYDYPNSSEDYIHGIGRTARSIKTGTAYTF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Echinops telfairi | ENSETEG00000019950 | 1 retrocopy | |
Felis catus | ENSFCAG00000003512 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000009496 | 4 retrocopies | |
Monodelphis domestica | ENSMODG00000003743 | 4 retrocopies | |
Mus musculus | ENSMUSG00000020719 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000001932 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000030680 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000009490 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000012149 | 1 retrocopy |
retro_tsyr_1269 ,
|
Tursiops truncatus | ENSTTRG00000008793 | 1 retrocopy |