RetrogeneDB ID: | retro_mmus_788 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 11:48751869..48753714(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000082454 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Ddx5 | ||
Ensembl ID: | ENSMUSG00000020719 | ||
Aliases: | Ddx5, 2600009A06Rik, G17P1, HUMP68, Hlr1, p68 | ||
Description: | DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037] |
Percent Identity: | 98.05 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MSSYSSDRDRGRDRGFGAPRFGGSRTGPLSGKKFGNPGEKLVKKKWNLDELPKFEKNFYQEHPDLARRTA |
MSSYSSDRD..RDRGFGAPRFGGSRTGPLSGKKFGNPGEKLVKKKWNLDELPKFEKNFYQEHPDLARRTA | |
Retrocopy | MSSYSSDRDHSRDRGFGAPRFGGSRTGPLSGKKFGNPGEKLVKKKWNLDELPKFEKNFYQEHPDLARRTA |
Parental | QEVDTYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQT |
QEVDTYRRSKEITVRGHNCPKPVL.FYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQT | |
Retrocopy | QEVDTYRRSKEITVRGHNCPKPVLKFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQT |
Parental | GSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQ |
GSGKTLSYLLPAIVHI.HQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQ | |
Retrocopy | GSGKTLSYLLPAIVHIIHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQ |
Parental | IRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSA |
IRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSA | |
Retrocopy | IRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSA |
Parental | TWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVET |
TWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLI.LMEEIMSEKENKTIVFVET | |
Retrocopy | TWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLILLMEEIMSEKENKTIVFVET |
Parental | KRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPN |
KRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVL.EFKHGKA.ILIATDVASRGLDVEDVKFVINYDYPN | |
Retrocopy | KRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLSEFKHGKASILIATDVASRGLDVEDVKFVINYDYPN |
Parental | SSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAINPKLLQLVEDRGSGRSRGRGGMK |
SSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQ.SDLISVLREANQAINPKLLQLVEDRGSGRSRGRGGMK | |
Retrocopy | SSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQASDLISVLREANQAINPKLLQLVEDRGSGRSRGRGGMK |
Parental | DDRRDRYSAGKRGGFNTFRDRENYDRGYSNLLKRDFGAKTQNGVYSAANYTNGSFGSNFVSAGIQTSFRT |
DDRRDRYSAGKRGGFNTFRDRENYDRGYSNLLKRDFGAKTQN.VYS.ANYTNGSFGSNFVSAGIQTSFRT | |
Retrocopy | DDRRDRYSAGKRGGFNTFRDRENYDRGYSNLLKRDFGAKTQNDVYSTANYTNGSFGSNFVSAGIQTSFRT |
Parental | GNPTGTYQNGYDSTQQYGSNVANMHNGMNQQAYAYPATAAAAPMIGYPMPTGYSQ |
GNPTGTYQN.YDSTQQYGSNVANMHNGMNQQAYAYPATAAAAPMIGYP.PTGYSQ | |
Retrocopy | GNPTGTYQNDYDSTQQYGSNVANMHNGMNQQAYAYPATAAAAPMIGYPVPTGYSQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 1 .50 RPM | 645 .89 RPM |
SRP007412_cerebellum | 1 .52 RPM | 930 .74 RPM |
SRP007412_heart | 1 .12 RPM | 347 .91 RPM |
SRP007412_kidney | 1 .81 RPM | 579 .55 RPM |
SRP007412_liver | 0 .66 RPM | 372 .57 RPM |
SRP007412_testis | 1 .78 RPM | 661 .48 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_12942 | 149 libraries | 311 libraries | 564 libraries | 38 libraries | 10 libraries |
TSS #2 | TSS_12943 | 207 libraries | 455 libraries | 381 libraries | 21 libraries | 8 libraries |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Echinops telfairi | ENSETEG00000019950 | 1 retrocopy | |
Felis catus | ENSFCAG00000003512 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000009496 | 4 retrocopies | |
Monodelphis domestica | ENSMODG00000003743 | 4 retrocopies | |
Mus musculus | ENSMUSG00000020075 | 2 retrocopies | |
Mus musculus | ENSMUSG00000020076 | 1 retrocopy | |
Mus musculus | ENSMUSG00000020719 | 1 retrocopy |
retro_mmus_788 ,
|
Pteropus vampyrus | ENSPVAG00000001932 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000030680 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000009490 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000012149 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000008793 | 1 retrocopy |