RetrogeneDB ID: | retro_rnor_1277 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 17:62576802..62577779(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Ddx5 | ||
Ensembl ID: | ENSRNOG00000030680 | ||
Aliases: | None | ||
Description: | probable ATP-dependent RNA helicase DDX5 [Source:RefSeq peptide;Acc:NP_001007614] |
Percent Identity: | 77.37 % |
Parental protein coverage: | 52.85 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | RQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDV-EKD-EKLIRLMEEIMSEKENKTIVFVETKRRC |
RQLA.DFLK.YIHIN...LELSANHNILQIVDV.HDV..K...KLI.LME..M..KENK.I.FV..KRRC | |
Retrocopy | RQLAKDFLKVYIHINTDTLELSANHNILQIVDVYHDV<QKEWKKLIHLMEKSMNYKENKNIIFVKIKRRC |
Parental | DELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSED |
DELTRK..RDGW.AMGIHGDKSQQE.DW.LN.FKHGK.PILIATDV.S.GLDVE.VKFVINYD..NSSED | |
Retrocopy | DELTRKLGRDGWAAMGIHGDKSQQECDWLLNKFKHGKVPILIATDVTS*GLDVENVKFVINYDHSNSSED |
Parental | YIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAINPKLLQLVEDRGSGRSRGRGGMKDDRR |
Y.HRIGRTA.STKT.TAY.FF.PNNIKQV..LISVL.EAN.AINPKLL.L.EDR.SG.SRGRGGMKDD.. | |
Retrocopy | YVHRIGRTAHSTKTDTAYIFFIPNNIKQVNNLISVLQEANPAINPKLL*LFEDRDSGHSRGRGGMKDDHH |
Parental | DRYSAGKRGGFNTFRDRENYDRGYSSLLKRDFGAKTQNGVYSAANYTNGSFGSNFVSAGIQTSFRTGNPT |
.RYSAGK.GGFNTFRDREN..R.Y.S.LKRD..AKTQNGV.SA.NYTNGSFG.NFVS.GIQTS.RTGN.T | |
Retrocopy | NRYSAGKGGGFNTFRDRENCNRAYPSQLKRDLRAKTQNGVHSAPNYTNGSFGRNFVSPGIQTSCRTGNST |
Parental | GTYQNGYDSTQQYGSNVANMHNGMNQQAYAYPATAAAAPMIGYPMPT |
GTYQNGYDST..YG.NVA.MHNGMNQQ.Y...AT.A.APM.G.PMPT | |
Retrocopy | GTYQNGYDST*LYGNNVASMHNGMNQQEYIFSATVAVAPMTGCPMPT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 475 .16 RPM |
SRP017611_kidney | 0 .00 RPM | 658 .95 RPM |
SRP017611_liver | 0 .00 RPM | 396 .23 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Echinops telfairi | ENSETEG00000019950 | 1 retrocopy | |
Felis catus | ENSFCAG00000003512 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000009496 | 4 retrocopies | |
Monodelphis domestica | ENSMODG00000003743 | 4 retrocopies | |
Mus musculus | ENSMUSG00000020719 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000001932 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000013691 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000030680 | 1 retrocopy |
retro_rnor_1277 ,
|
Tupaia belangeri | ENSTBEG00000009490 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000012149 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000008793 | 1 retrocopy |