RetrogeneDB ID: | retro_mluc_1555 | ||
Retrocopylocation | Organism: | Microbat (Myotis lucifugus) | |
Coordinates: | GL429861:3014375..3015138(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSMLUG00000023234 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 93.33 % |
Parental protein coverage: | 99.21 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | GAAEADCTLFVGNLETKVT-EELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPYAMNLLNG |
GAA..D.TLFVGNLETKVT.EELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEV.VPYA.NLLNG | |
Retrocopy | GAAVVDRTLFVGNLETKVT>EELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVPVPYATNLLNG |
Parental | IKLFGRPIKIQFRSGSSHASQDVSLSYSQHHVGNSSPTSTSPN---RTVDNMTPSPQIIQRSFSSPENFQ |
IKLFGRPI.IQFRSGSSHASQDVSLS.SQHHVGNSSPTSTSPN...RT.DNMTPSPQIIQRSFSSPENFQ | |
Retrocopy | IKLFGRPINIQFRSGSSHASQDVSLSCSQHHVGNSSPTSTSPNRHERTMDNMTPSPQIIQRSFSSPENFQ |
Parental | KQAVMNNVLRQMSYGGKFGSPHLDQSGFSPSVQSHNHSYNQSSSSQWRQDTPSSLRKARQSSHPYIVDRH |
KQAVMNNV.RQMSYGGKFGSPHLDQSGF.PSVQSHNHSYNQSSSSQWRQ.TPSSLRKARQSSHPY..DRH | |
Retrocopy | KQAVMNNVSRQMSYGGKFGSPHLDQSGFPPSVQSHNHSYNQSSSSQWRQNTPSSLRKARQSSHPYLADRH |
Parental | YSREQHYRGHRDDYFYEDRNHDGWSHDHDNRRDSSRAGKWHSSRN |
YSREQHYRGHRDDYFYEDRNHDGWSHDHDNRRDSSRAGKWHSSRN | |
Retrocopy | YSREQHYRGHRDDYFYEDRNHDGWSHDHDNRRDSSRAGKWHSSRN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000013514 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000012747 | 1 retrocopy | |
Homo sapiens | ENSG00000076053 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000009941 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000012444 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000023234 | 2 retrocopies |
retro_mluc_1555 , retro_mluc_587,
|
Monodelphis domestica | ENSMODG00000013918 | 1 retrocopy | |
Mus musculus | ENSMUSG00000042396 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000007323 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000003342 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000016857 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000003894 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000004305 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000012459 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000001515 | 3 retrocopies | |
Vicugna pacos | ENSVPAG00000006300 | 1 retrocopy |