Parental gene:

ENSPPYG00000003894

Aliases:None
Description:None
Organism:Orangutan (Pongo abelii)
Coordinates:11:111230057..111239650(+)


>ENSPPYG00000003894
ATGGGGGCGGCGGCGGCGGAAGCGGATCGCACTCTCTTTGTGGGCAACCTTGAAACGAAAGTGACCGAGGAGCTCCTTTT
CGAGCTTTTCCACCAGGCTGGGCCAGTAATAAAGGTGAAAATTCCAAAAGATAAGGATGGTAAACCAAAGCAGTTTGCGT
TTGTGAATTTCAAACATGAAGTATCTGTTCCTTATGCAATGAATCTACTTAATGGAATCAAACTTTATGGAAGGCCTATC
AAAATTCAATTTAGATCAGGAAGTAGTCATGCCTCGCAAGATGTCAGTTTGTCATATCCCCAGCATCATGTTGGAAATTC
AAGCCCTACCTCCACATCTCCTAGCAGCAGGTACGAAAGGACTATGGATAACATGACTTCATCAGCACCAATAATTCAGA
GATCTTTCTCTTCTCCAGAAAATTTTCAGAGACAAGCAGTGATGAACAGTGCTTTGAGACAAATGTCATATAGTGGAAAA
TTTGGTTCTTCACCTCTGGATCAATCAGGATTTTCACCATCAGTTCAATCACACAGTCATAGTTTTAACCAGTCTTCAAG
CTCCCAGTGGCGCCACGGTACACCATCATCACAGCGGAAAGTCAGAATGAATTCTCATCCCTACCTAGCAGATAGACATT
ATAGCCGGGAACAGCGTTACACTGATCATGGGTCTGACCATCATTACAGAGGAAAGAGAGATGATTTCTTCTATGAAGAC
AGGAATCACGATGGCTGGAGCCATGACTATGATAACAGAAGAGACAGTACTAGAGATGGAAAATGGCGCTCATCTCGACA
CTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 3 .48 RPM
SRP007412_cerebellum 9 .12 RPM
SRP007412_heart 4 .73 RPM
SRP007412_kidney 8 .72 RPM
SRP007412_liver 7 .77 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000013514 ortholog_one2one 1 retrogene
retro_cfam_1021,
Choloepus hoffmanni ENSCHOG00000012747 ortholog_one2one 1 retrogene
retro_chof_570,
Homo sapiens ENSG00000076053 ortholog_one2many 1 retrogene
retro_hsap_2283,
Gorilla gorilla ENSGGOG00000009941 ortholog_one2one 1 retrogene
retro_ggor_1696,
Loxodonta africana ENSLAFG00000012444 ortholog_one2one 1 retrogene
retro_lafr_892,
Myotis lucifugus ENSMLUG00000023234 ortholog_one2one 2 retrogenes
retro_mluc_1555, retro_mluc_587,
Monodelphis domestica ENSMODG00000013918 ortholog_one2one 1 retrogene
retro_mdom_535,
Mus musculus ENSMUSG00000042396 ortholog_one2one 1 retrogene
retro_mmus_2436,
Nomascus leucogenys ENSNLEG00000007323 ortholog_one2one 1 retrogene
retro_nleu_409,
Oryctolagus cuniculus ENSOCUG00000003342 ortholog_one2one 1 retrogene
retro_ocun_924,
Otolemur garnettii ENSOGAG00000016857 ortholog_one2one 1 retrogene
retro_ogar_3103,
Pongo abelii ENSPPYG00000000912 within_species_paralog 1 retrogene
retro_pabe_1124,
Pan troglodytes ENSPTRG00000004305 ortholog_one2one 1 retrogene
retro_ptro_1617,
Ictidomys tridecemlineatus ENSSTOG00000012459 ortholog_one2one 1 retrogene
retro_itri_889,
Tursiops truncatus ENSTTRG00000001515 ortholog_one2one 3 retrogenes
retro_ttru_1316, retro_ttru_1441, retro_ttru_478,
Vicugna pacos ENSVPAG00000006300 ortholog_one2one 1 retrogene
retro_vpac_311,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_1669 95.52 75.28
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Download FASTA sequences of all ENSPPYG00000003894 retrocopies