RetrogeneDB ID: | retro_ptro_1617 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 2A:81232119..81232880(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RBM7 | ||
Ensembl ID: | ENSPTRG00000004305 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 96.09 % |
Parental protein coverage: | 95.51 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | FVGNLETKVTEELLFELFHQAGPVIKVK-IPKDKDGKPKQFAFVNFKHEVSVPYAMNLLNGIKLYGRPIK |
FVGNLETKVTEELLFELFHQAGPVIKVK.IPKDKDGKPKQFAFVNFKHEVSVPYAMNLLNGIKLYGRPIK | |
Retrocopy | FVGNLETKVTEELLFELFHQAGPVIKVK<IPKDKDGKPKQFAFVNFKHEVSVPYAMNLLNGIKLYGRPIK |
Parental | IQFRSGSSHAPQDVSLSYPQHHVGNSSPTSTSPSSRYERTMDNMTSSAQIIQRSFSSPENFQRQAVMNSA |
IQFRSGSSHA.QDVSL.YPQHHVGNSSPTSTSPS.RYERT.DNMTSSAQIIQRSFSSPENFQRQAVMNSA | |
Retrocopy | IQFRSGSSHALQDVSLPYPQHHVGNSSPTSTSPS-RYERTRDNMTSSAQIIQRSFSSPENFQRQAVMNSA |
Parental | LRQMSYGGKFGSSPLDQSGFSPSVQSHSHSFNQSSSSQWRQGTPSSQRKVRMNSYPYLADRHYSREQRYT |
LRQMSYGGKFGSSP.DQ.GFSPSVQSHSHSFNQSSSSQWRQGTPSSQRKVRMNS.PYLADRHYS.EQR.T | |
Retrocopy | LRQMSYGGKFGSSPMDQLGFSPSVQSHSHSFNQSSSSQWRQGTPSSQRKVRMNSHPYLADRHYSQEQRCT |
Parental | DHGSDHHYRGKRDDFFYEDRNHDGWSHDYDNRRDSSRDGKWRSSRH |
DHGSDHHYRGKRDDFFYEDRNHDGWSHDYDNRRDSSRDGKWRSSRH | |
Retrocopy | DHGSDHHYRGKRDDFFYEDRNHDGWSHDYDNRRDSSRDGKWRSSRH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .11 RPM | 4 .29 RPM |
SRP007412_cerebellum | 0 .00 RPM | 7 .21 RPM |
SRP007412_heart | 0 .03 RPM | 9 .21 RPM |
SRP007412_kidney | 0 .05 RPM | 12 .47 RPM |
SRP007412_liver | 0 .03 RPM | 8 .87 RPM |
SRP007412_testis | 0 .00 RPM | 18 .44 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2283 |
Gorilla gorilla | retro_ggor_1696 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000013514 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000012747 | 1 retrocopy | |
Homo sapiens | ENSG00000076053 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000009941 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000012444 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000023234 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000013918 | 1 retrocopy | |
Mus musculus | ENSMUSG00000042396 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000007323 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000003342 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000016857 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000003894 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000001243 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000004305 | 1 retrocopy |
retro_ptro_1617 ,
|
Ictidomys tridecemlineatus | ENSSTOG00000012459 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000001515 | 3 retrocopies | |
Vicugna pacos | ENSVPAG00000006300 | 1 retrocopy |