RetrogeneDB ID:

retro_mluc_1918

Retrocopy
location
Organism:Microbat (Myotis lucifugus)
Coordinates:GL429947:2291635..2293075(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSMLUG00000014921
Aliases:None
Status:KNOWN_PSEUDOGENE
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSMLUG00000017084
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_mluc_1918
CTATTCATCAACAACGAGTGGCAAGATGCAGTCAGCAAGAAGACCTTCCCAACAGTCAACCCCTCCACGGGAGAGGTCAT
CGGCCATGTGGCCGAAGGGGACCGAGCCGATGTGGATCGGGCAGTGAAAGCAGCTCGCGAGGCCTTCCGCCTCGGGTCTC
CATGGCGCCGGATGGATGCCTCTGAGCGGGGCCGGCTGCTGAACCGCCTGGCTGACCTAGTGGAGCGGGATCGTGTCTAC
TTGGCCTCACTGGAGACCTTGGACAACGGGAAGCCTTTCCAGGAGTCTTATGTCTTGGACCTGGATGAGGTCATCAAGGT
GTACCGGTACTTTGCCGGCTGGGCTGACAAGTGGCACGGCAAGACCATCCCCATGGACGGTGAGCATTTCTGCTTCACCC
GGCATGAGCCCGTGGGTGTCTGTGGCCAGATAATCCCGTGGAACTTCCCCTTGGTCATGCAGGGCTGGAAACTCGCCCCG
GCACTCGCCACCGGCAACACCGTGGTCATGAAGGTTGCAGAGCAGACCCCCCTTTCTGCCCTGTACTTGGCCTCCCTCAT
CAAGGAGGCAGGCTTCCCCCCGGGGGTGGTGAACATCATCACAGGCTATGGCCCAACAGCAGGAGCGGCCGTGGCCCAGC
ACATGGATATTGACAAAGTTGCTTTTACTGGCTCGACCGAGGTGGGCCACCTGATCCAGAAGGCAGCTGGAGATTCCAAC
CTCAAGAGAGTCACCTTAGAGCTGGGCGGGAAGAGCCCCAGCATCGTGTTGGCGGACGCTGACCTGGGCCACGCCGTGGA
GCAGTGCCACGAAGCCCTCTTCTTCAACATGGGCCAGTGCCGCTGTGCAGGGTCCCGGACCTTCGTCGAAGAATCCATCT
ATGAATGAGTTTTCTCGAGAGAAACAGTGGAGAAAGCGAAGCAGAGGAAAGTTGGGAACCCCTTTTGAGCTGGACACCCA
GCAGGGCCCCAGGTGACAAGGAGCAGTTTGAGCGAATCCTGGGGCTACATCCGGGTTGGCCAGAAGGAGGGGGCAAAACT
TCTCTGCGGTGGGGAGCGTTTTGGGGAGCGGGGTTTCTTCATCAAGCCCACAGTCTTTGGTGGTGTGCAAGATGACATGA
GGATTGCCAAGGAGGAGATCTTTGGGCCTGTGCAGCCCCTGTTCAAGTTCAAGAAAATTGAGGAGGTGATTGAGAGGGCC
AACAACACCAGGTACGGCTTGGCTGCCGCTGTGTTCACACGGGACCTGGACAAGGCCATGTACTTCACACAGGCACTCCA
AGCGGGGACGGTGTGGGTAAACACCTACAACATTGTCACGTGCCACACGCCGTTTGGAGGCTTTAAGGAGTCCGGTAATG
GGAGGGAGCTCGGGGAGGACGGGCTTAAGGCCTACACAGAGGTGAAGACAGTCACCATCAAGGTTCCACAGAAGAATTCG

ORF - retro_mluc_1918 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 74.69 %
Parental protein coverage: 100. %
Number of stop codons detected: 2
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalIFINNEWHDAVSKKTFPTINPSTGEVICQVAEGDKEDVDRAVKAARAAFQLGSPWRRMDASNRGRLLNRL
.FINNEW.DAVSKKTFPT.NPSTGEVI..VAEGD..DVDRAVKAAR.AF.LGSPWRRMDAS.RGRLLNRL
RetrocopyLFINNEWQDAVSKKTFPTVNPSTGEVIGHVAEGDRADVDRAVKAAREAFRLGSPWRRMDASERGRLLNRL
ParentalADLIERDRTYLAALETLDNGKPYVISYLVDLDMVLKCLRYYAGWADKYHGKTIPIDGDFFSYTRHEPVGV
ADL.ERDR.YLA.LETLDNGKP...SY..DLD.V.K..RY.AGWADK.HGKTIP.DG..F..TRHEPVGV
RetrocopyADLVERDRVYLASLETLDNGKPFQESYVLDLDEVIKVYRYFAGWADKWHGKTIPMDGEHFCFTRHEPVGV
ParentalCGQIIPWNFPLLMQAWKLGPALATGNVVVMKVAEQTPLTALYVANLIKEAGFPPGVVNIIPGFGPTAGAA
CGQIIPWNFPL.MQ.WKL.PALATGN.VVMKVAEQTPL.ALY.A.LIKEAGFPPGVVNII.G.GPTAGAA
RetrocopyCGQIIPWNFPLVMQGWKLAPALATGNTVVMKVAEQTPLSALYLASLIKEAGFPPGVVNIITGYGPTAGAA
ParentalIASHKDVDKVAFTGSTEVGRLIQVAAGNSNLKRVTLELGGKSPNIIMSDADMDWAVEQAHFALFFNQGQC
.A.H.D.DKVAFTGSTEVG.LIQ.AAG.SNLKRVTLELGGKSP.I...DAD...AVEQ.H.ALFFN.GQC
RetrocopyVAQHMDIDKVAFTGSTEVGHLIQKAAGDSNLKRVTLELGGKSPSIVLADADLGHAVEQCHEALFFNMGQC
ParentalCCAGSRTFVQEDVYA-EFVERSVARAKSRVVGDPFDSQTEQGPQV-DETQFKKIL-GYINSGKKEGAKLL
.CAGSRTFV.E..Y...F....V..AK.R.VG.PF......GPQV.D..QF..IL.GYI..G.KEGAKLL
RetrocopyRCAGSRTFVEESIYE*VFSRETVEKAKQRKVGNPF*AGHPAGPQV<DKEQFERIL>GYIRVGQKEGAKLL
ParentalCGGGAAADRGYFIQPTVFGDVQDGMTIAKEEIFGPVMQILKFKTIEEVVGRANNSMYGLAAAVFTKDLDK
CGG.....RG.FI.PTVFG.VQD.M.IAKEEIFGPV....KFK.IEEV..RANN..YGLAAAVFT.DLDK
RetrocopyCGGERFGERGFFIKPTVFGGVQDDMRIAKEEIFGPVQPLFKFKKIEEVIERANNTRYGLAAAVFTRDLDK
ParentalANYLSQALQAGTVWINCYDVFGAQSPFGGYKMSGNGRELGEYGLKAYTEVKTVTVKVPQKNS
A.Y..QALQAGTVW.N.Y.......PFGG.K.SGNGRELGE.GLKAYTEVKTVT.KVPQKNS
RetrocopyAMYFTQALQAGTVWVNTYNIVTCHTPFGGFKESGNGRELGEDGLKAYTEVKTVTIKVPQKNS

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Myotis lucifugus was not studied using ChIP-Seq data.

EST - click to see more details

Myotis lucifugus was not studied using EST data.

TSS - click to see more details

Myotis lucifugus was not studied using FANTOM5 data.

Lab - click to see more details

retro_mluc_1918 was not experimentally validated.

Retrocopy orthology:
Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 21 parental genes, and 22 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000136641 retrocopy
retro_amel_51,
Bos taurus ENSBTAG000000087431 retrocopy
retro_btau_48,
Canis familiaris ENSCAFG000000086831 retrocopy
retro_cfam_1493,
Equus caballus ENSECAG000000176732 retrocopies
retro_ecab_1054, retro_ecab_1061,
Felis catus ENSFCAG000000220001 retrocopy
retro_fcat_1590,
Homo sapiens ENSG000001112751 retrocopy
retro_hsap_19,
Gorilla gorilla ENSGGOG000000071081 retrocopy
retro_ggor_33,
Latimeria chalumnae ENSLACG000000117981 retrocopy
retro_lcha_108,
Microcebus murinus ENSMICG000000034871 retrocopy
retro_mmur_19,
Myotis lucifugus ENSMLUG00000017084 1 retrocopy
retro_mluc_1918 ,
Macaca mulatta ENSMMUG000000083361 retrocopy
retro_mmul_247,
Mustela putorius furoENSMPUG000000022821 retrocopy
retro_mputfur_27,
Mus musculus ENSMUSG000000294551 retrocopy
retro_mmus_222,
Nomascus leucogenys ENSNLEG000000000161 retrocopy
retro_nleu_22,
Otolemur garnettii ENSOGAG000000330931 retrocopy
retro_ogar_203,
Pongo abelii ENSPPYG000000049661 retrocopy
retro_pabe_32,
Pteropus vampyrus ENSPVAG000000131891 retrocopy
retro_pvam_163,
Rattus norvegicus ENSRNOG000000013441 retrocopy
retro_rnor_307,
Sus scrofa ENSSSCG000000098891 retrocopy
retro_sscr_9,
Ictidomys tridecemlineatus ENSSTOG000000150091 retrocopy
retro_itri_33,
Xenopus tropicalis ENSXETG000000209301 retrocopy
retro_xtro_12,


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