RetrogeneDB ID:

retro_mmul_247

Retrocopy
location
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:15:39015750..39017304(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSMMUG00000013057
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:ALDH2
Ensembl ID:ENSMMUG00000008336
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_mmul_247
ATGCTGCGCTTCCTGGCACCCCGGCTGCTTTGCCTGCAGGGCAGGACTGCCCGGTACTCCTCGGCAGCAGCCCTCCCAAG
CCCCATTCTGAACCCAGGCATCTCCTACAACCAGCTGTTCATCAACAACGAATGGCAAGATGCAGTCAGCAAGAAGACTT
TCCCGACGGTCAACCCTACCACCGGGGAGGTCATCGGGCACGTGGCTGAAGGTGACCGGGCTGATGTGGATCTGGCCGTG
AAAGCAGCCCGGGAGGCCTTCCGCTTGGGGTCCCCATGGCGCCGGATGGATGCCTCTGAGCGGGGCCAGCTGCTGAACCG
CCTGGCAGACCTAGTGGAGCGGGATCGAGTCTACTTGGCCTCACTGGAGACCTTGGACAATGGGAAGCCTTTTCAAGAGT
CTTACGCCTTGGACTTGGATGAGGTCATCAAGGTGTATCGGTACTTTGCCGGCTGGGCTGACAAGTGGCATGGCAAGACG
ATCCCCATGGATGGCGAGCATTTCTGCTTCACCCGGCATGAGCCCGTTGGTGTCTGTGGCCAGATCATCCCGTGGAACTT
TCCCTTGGTAATGCAGGGTTGGAAACTCGCCCCGGCGCTTGCCACAGGCAACACTGTGGTTATGAAGGTGGCAGAGCAGA
CACCCCTCTCTGCCCTGTACGTGGCCTCCCTCATCAAGGAGGCGGGCTTTCCCCCTGGGGTGGTGAACATCATCACGGGC
TATGGCCCAACAGCAGGTGCGGCCATCGCGCAGCACATGGATGTTGACAAAGTTGCCTTCACCGGTTCCACCGAGGTAGG
CCATCTGATCCAGAAAGCAGCTGGCGATTCCAACCTCAAGAGAGTCACCCTGGAGCTGGGCGGCAAGAGCCCCAGCATCG
TGCTGGCCGATGCTGACATGGAGCACGCCGTAGAGCAGTGCCACGAAGCCCTGTTCTTCAACATGGGCCAGTGCTGCTGT
GCTGGCTCCCGGACCTTTGTGGAAGAATCCATCTACAATGAGTTTCTCGAGAGAACCGTGGAGAAAGCAAAGCAGAGGAA
AGTGGGGAACCCCTTTGAGCTGGACACCCAGCAAGGGCCTCAGGTGGACAAGGAGCAGTTTGAACGAGTCCTAGGCTACA
TCCAACTTGGCCAGAAGGAGGGTGCAAAACTGCTCTGTGGTGGAGAGCGTTTTGGGGAGCGTGGTTTCTTCATCAAGCCT
ACTGTCTTTGGTGGCGTGCAGGATGACATGAGGATCGCCAAAGAGGAGATCTTTGGGCCTGTGCAGCCCCTGTTCAAGTT
CAAGAAGATTGAGGAGGTGATTGAGAGGGCCAACAACACTAGGTATGGCCTGGCTGCGGCTGTGTTCACCCGGGACCTGG
ACAAGGCCATGTACTTCACCCAGGCACTCCAGGCCGGGACCGTGTGGGTAAACACCTACAACATCGTCACCTGCCACACG
CCATTTGGAGGGTTTAAGGAATCTGGAAACGGGAGGGAGCTGGGTGAGGATGGGCTTAAGGCCTACACAGAGGTGAAGAC
GGTCACCATCAAAGTTCTTCAGAAGAACTCGTAA

ORF - retro_mmul_247 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 74.42 %
Parental protein coverage: 98.95 %
Number of stop codons detected: 0
Number of frameshifts detected: 0


Retrocopy - Parental Gene Alignment:

ParentalQIFINNEWHNAVSRKTFPTVNPSTGEVICQVAEGDKEDVDKAVKAARAAFQLGSPWRRMDASHRGRLLNR
Q.FINNEW..AVS.KTFPTVNP.TGEVI..VAEGD..DVD.AVKAAR.AF.LGSPWRRMDAS.RG.LLNR
RetrocopyQLFINNEWQDAVSKKTFPTVNPTTGEVIGHVAEGDRADVDLAVKAAREAFRLGSPWRRMDASERGQLLNR
ParentalLADLIERDRTYLAALETLDNGKPYVTSYLVDLDMVLKCLRYYAGWADKYHGKTIPIDGDFFSYTRHEPVG
LADL.ERDR.YLA.LETLDNGKP...SY..DLD.V.K..RY.AGWADK.HGKTIP.DG..F..TRHEPVG
RetrocopyLADLVERDRVYLASLETLDNGKPFQESYALDLDEVIKVYRYFAGWADKWHGKTIPMDGEHFCFTRHEPVG
ParentalVCGQIIPWNFPLLMQAWKLGPALATGNVVVMKVAEQTPLTALYVANLIKEAGFPPGVVNIVPGFGPTAGA
VCGQIIPWNFPL.MQ.WKL.PALATGN.VVMKVAEQTPL.ALYVA.LIKEAGFPPGVVNI..G.GPTAGA
RetrocopyVCGQIIPWNFPLVMQGWKLAPALATGNTVVMKVAEQTPLSALYVASLIKEAGFPPGVVNIITGYGPTAGA
ParentalAIASHEDVDKVAFTGSTETGRLIQVAAGSSNLKRVTLELGGKSPNIIMSDADMDWAVEQAHFALFFNQGQ
AIA.H.DVDKVAFTGSTE.G.LIQ.AAG.SNLKRVTLELGGKSP.I...DADM..AVEQ.H.ALFFN.GQ
RetrocopyAIAQHMDVDKVAFTGSTEVGHLIQKAAGDSNLKRVTLELGGKSPSIVLADADMEHAVEQCHEALFFNMGQ
ParentalC----SRTFVQEDIYDEFVERSVARAKSRVVGNPFDSKTEQGPQVDETQFKKILGYINTGKQEGAKLLCG
C....SRTFV.E.IY.EF.ER.V..AK.R.VGNPF...T.QGPQVD..QF...LGYI..G..EGAKLLCG
RetrocopyCCCAGSRTFVEESIYNEFLERTVEKAKQRKVGNPFELDTQQGPQVDKEQFERVLGYIQLGQKEGAKLLCG
ParentalGGIAADRGYFIQPTVFGDVQDGMTIAKEEIFGPVMQILKFKTIEEVVGRANNSTYGLAAAVFTKDLDKAN
G.....RG.FI.PTVFG.VQD.M.IAKEEIFGPV....KFK.IEEV..RANN..YGLAAAVFT.DLDKA.
RetrocopyGERFGERGFFIKPTVFGGVQDDMRIAKEEIFGPVQPLFKFKKIEEVIERANNTRYGLAAAVFTRDLDKAM
ParentalYLSQALQAGTVWVNCYDVFGAQSPFGGYKMSGSGRELGEYGLQAYTEVKTVSV
Y..QALQAGTVWVN.Y.......PFGG.K.SG.GRELGE.GL.AYTEVKTV..
RetrocopyYFTQALQAGTVWVNTYNIVTCHTPFGGFKESGNGRELGEDGLKAYTEVKTVTI

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain 2 .69 RPM 58 .04 RPM
SRP007412_brain_prefrontal_cortex 3 .49 RPM 113 .68 RPM
SRP007412_cerebellum 4 .84 RPM 52 .63 RPM
SRP007412_heart 12 .31 RPM 182 .84 RPM
SRP007412_kidney 44 .37 RPM 412 .32 RPM
SRP007412_liver 476 .75 RPM 1404 .87 RPM
SRP007412_testis 3 .32 RPM 43 .84 RPM

ChIP-Seq - click to see more details

Macaca mulatta was not studied using ChIP-Seq data.

EST - click to see more details

No EST(s) were mapped for retro_mmul_247 retrocopy.

TSS - click to see more details

Macaca mulatta was not studied using FANTOM5 data.

Lab - click to see more details

retro_mmul_247 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_mmul_247 has 8 orthologous retrocopies within eutheria group .

Species RetrogeneDB ID
Homo sapiens retro_hsap_19
Pan troglodytes retro_ptro_118
Gorilla gorilla retro_ggor_33
Pongo abelii retro_pabe_32
Mus musculus retro_mmus_222
Rattus norvegicus retro_rnor_307
Bos taurus retro_btau_48
Sus scrofa retro_sscr_9
Parental genes homology:
Parental genes homology involve 21 parental genes, and 22 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000136641 retrocopy
retro_amel_51,
Bos taurus ENSBTAG000000087431 retrocopy
retro_btau_48,
Canis familiaris ENSCAFG000000086831 retrocopy
retro_cfam_1493,
Equus caballus ENSECAG000000176732 retrocopies
retro_ecab_1054, retro_ecab_1061,
Felis catus ENSFCAG000000220001 retrocopy
retro_fcat_1590,
Homo sapiens ENSG000001112751 retrocopy
retro_hsap_19,
Gorilla gorilla ENSGGOG000000071081 retrocopy
retro_ggor_33,
Latimeria chalumnae ENSLACG000000117981 retrocopy
retro_lcha_108,
Microcebus murinus ENSMICG000000034871 retrocopy
retro_mmur_19,
Myotis lucifugus ENSMLUG000000170841 retrocopy
retro_mluc_1918,
Macaca mulatta ENSMMUG00000008336 1 retrocopy
retro_mmul_247 ,
Mustela putorius furoENSMPUG000000022821 retrocopy
retro_mputfur_27,
Mus musculus ENSMUSG000000294551 retrocopy
retro_mmus_222,
Nomascus leucogenys ENSNLEG000000000161 retrocopy
retro_nleu_22,
Otolemur garnettii ENSOGAG000000330931 retrocopy
retro_ogar_203,
Pongo abelii ENSPPYG000000049661 retrocopy
retro_pabe_32,
Pteropus vampyrus ENSPVAG000000131891 retrocopy
retro_pvam_163,
Rattus norvegicus ENSRNOG000000013441 retrocopy
retro_rnor_307,
Sus scrofa ENSSSCG000000098891 retrocopy
retro_sscr_9,
Ictidomys tridecemlineatus ENSSTOG000000150091 retrocopy
retro_itri_33,
Xenopus tropicalis ENSXETG000000209301 retrocopy
retro_xtro_12,


Copyright © RetrogeneDB 2014-2017