Parental gene:

aldh2.2, ENSLACG00000011798

Aliases:None
Description:aldehyde dehydrogenase 2, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-030326-5]
Organism:Coelacanth (Latimeria chalumnae)
Coordinates:JH126873.1:637912..664233(-)


>ENSLACG00000011798
ATGCTTCGACTTGCGCTCGGAAATTTGTCGAAACTCTCCCGGTTTTCTTCTCCGGTTTCTCTAAACCGATTCTCGGCCGC
AGCTGCTGCAATCCCGACCCCCAACCCCCAGCAAGAAGTCTATTTCAATAAGATTTTTATAAACAATGAGTGGCATGATG
CAGTTAGCAAGAAAACATTGCCTTCAATCAATCCAGCCACAGGAGAAGTTATCTGTCAAGTTGCAGAGGGAGACAAGGCT
GATGTAGATAAAGCAGTAAAGGCAGCACGAAATGCCTTTAAACTAGGATCACCATGGAGACGAATGGATGCCTCTGAAAG
GGGTGTGCTGCTAAACCGCTTAGCTGACCTGATTGAGCGAGACAGAACTTACTTGGCTACGTTAGAAGCGCTGGACAATG
GGAAGCCGTACGCGGTAGCTTATGCAGTGGACCTGAATATGGTAGTCAAATGCCTCCGATACTATGCAGGATGGGCTGAC
AAATGTCATGGAAAGACCATTCCCATGGATGGTGACTTTTTTTGCTATACTCGACATGAGCCAGTTGGAGTCTGTGGACA
GATTATTCCATGGAATTTCCCACTGCTGATGCAGGCATGGAAGCTTGGACCAGCCCTGGCAACTGGGAATGTGATAGTGA
TGAAAGTGGCTGAACAAACTCCCTTAACTGCGCTTTATGTGGCCAATCTCATTAAAGAGGCGGGATTTCCACCAGGTGTA
GTCAACATTATTCCTGGTTTCGGGCCAACTGCTGGTGCTGCCATTGCTTCACACATGGATGTAGACAAGGTTGCTTTCAC
AGGATCCACAGAGGTTGGTCATCTGATCCAGAAGGCAGCTGGAGGCAGTAATTTGAAGCGAATAACGCTTGAACTTGGCG
GAAAGAGTCCAAATATCATAATGTCAGATGCAGACATGGACTATGCAGTAGAGCAGGCCCATTTTGCCCTGTTTTTTAAC
CAAGGGCAATGTTGTTGTGCTGGATCCCGTACTTATGTCCAAGACTCCATCTACGATGAGTTTTTGGAGAGAAGTGTAGA
AAGAGCTAAGGCCAGAGTTGTTGGAAACCCATTTGATCTAAACACCGAGCAAGGACCTCAGATTGATGAGGAGCAATTCC
AAAAGATCCTTGGTTACATCAGTACTGGAAAACGTGAAGGAGCTAAGCTGCTTTGTGGAGGAGGTGTTGCTGCAGACCGA
GGTTACTTCATTCTTTTTTTTTTTTTTTTTAATCTTCATAAAGGTCAGAAAGTACAAATAGTCTCTCTTATTTTTGGACC
AGTTATGCAAGTCCTGAAATTCAAATCAATTGAGGAAGTAATTGAAAGAGCAAATGATACTCAGTATGGTTTGGCTGCAG
CTGTTTTCACAAGAGACCTTGATAAGGCTAACTATGTGTCCCAGGGACTGCGAGCTGGAACAGTTTGGATAAACTGCTAT
GATGTATTTGGAGCTCAGTCCCCATTTGGTGGGTACAAAACGTCAGGAAATGGTAGAGAATTGGGCGAATATGGTCTTGA
GGCCTATACTGAAGTAAAGACAGTAACGATCAAGGTTCCTCAGAAGAACTCTTAA

Library Parental gene expression (RPM)
DRP000627_pectoral_fin 37 .72 RPM
DRP000627_kidney 70 .91 RPM
DRP000627_pelvic_fin 112 .70 RPM
DRP000627_pharynx 185 .66 RPM
DRP000627_gill 96 .31 RPM
DRP000627_tail_muscle 145 .83 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000013664 ortholog_one2many 1 retrogene
retro_amel_51,
Bos taurus ENSBTAG00000008743 ortholog_one2one 1 retrogene
retro_btau_48,
Canis familiaris ENSCAFG00000008683 ortholog_one2many 1 retrogene
retro_cfam_1493,
Equus caballus ENSECAG00000017673 ortholog_one2one 2 retrogenes
retro_ecab_1054, retro_ecab_1061,
Felis catus ENSFCAG00000022000 ortholog_one2one 1 retrogene
retro_fcat_1590,
Homo sapiens ENSG00000111275 ortholog_one2many 1 retrogene
retro_hsap_19,
Gorilla gorilla ENSGGOG00000007108 ortholog_one2one 1 retrogene
retro_ggor_33,
Microcebus murinus ENSMICG00000003487 ortholog_one2one 1 retrogene
retro_mmur_19,
Myotis lucifugus ENSMLUG00000017084 ortholog_one2one 1 retrogene
retro_mluc_1918,
Macaca mulatta ENSMMUG00000008336 ortholog_one2one 1 retrogene
retro_mmul_247,
Mustela putorius furo ENSMPUG00000002282 ortholog_one2one 1 retrogene
retro_mputfur_27,
Mus musculus ENSMUSG00000029455 ortholog_one2one 1 retrogene
retro_mmus_222,
Nomascus leucogenys ENSNLEG00000000016 ortholog_one2one 1 retrogene
retro_nleu_22,
Otolemur garnettii ENSOGAG00000033093 ortholog_one2one 1 retrogene
retro_ogar_203,
Pongo abelii ENSPPYG00000004966 ortholog_one2one 1 retrogene
retro_pabe_32,
Pteropus vampyrus ENSPVAG00000013189 ortholog_one2one 1 retrogene
retro_pvam_163,
Rattus norvegicus ENSRNOG00000001344 ortholog_one2one 1 retrogene
retro_rnor_307,
Sus scrofa ENSSSCG00000009889 ortholog_one2one 1 retrogene
retro_sscr_9,
Ictidomys tridecemlineatus ENSSTOG00000015009 ortholog_one2one 1 retrogene
retro_itri_33,
Xenopus tropicalis ENSXETG00000020930 ortholog_one2one 1 retrogene
retro_xtro_12,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_lcha_108 70.61 96.37
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSLACG00000011798 retrocopies