RetrogeneDB ID: retro_mluc_2397

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430307:596686..597205(+)
• Located in intron of: ENSMLUG00000003880

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: GLTP
• Ensembl ID: ENSMLUG00000012545
• Aliases: None
• Description: None

Sequence

>retro_mluc_2397
GATTGCCTTGGGTCCCCAGTGTTTACGCCCATCGAGGCAGACATAAGTGGTAACATCACGAAAATCAAAGCTGTGTACAA
CACCGACCCGGCCGAGTTCCGGACCCTGCAGAACATCCTGGAGGCGCAAAAGGAAATGGATGGAGCAGAGTGGCCAAAGT
GGGGGCCACGCTGGCGCTGATGTGGCTGAAAAGGACCCTCCGCTTCACCTAGGTCTTCCTGCAGAGCATCTGCGACGGGG
AGCGGGACGAGAGCCACCCCAACCTCATCCGCATCAACGCCACCAAGGCCTACGAGATGGCGCTCAAGAATCACGGCTGG
ATCGTGCAGAAGATCTTCCAGGCAGCGCTGTGTGCCGCGCCCTGCAAGTCCGACTTCCTGAAAGCGCTCTCCAAGGCCAG
CCGTGACGGAGGAGGTGTGCCCGGAGAAGGTCCGCCTGCTCCTGGTCAGCTACACGGCCACCGTTGACGTCATCTAGGAA
ATGTACACCAAGATGAACGCCGAGCTCAACTACAAGGTG

Alignment

ORF - retro_mluc_2397 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 83.33 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  DCLGSPVFTPIKADISGNITKIKAVYNTDPAKFRTLQNILEAEKEMYGAEWPK-VGATLALMWLKRRRGL
          DCLGSPVFTPI.ADISGNITKIKAVYNTDPA.FRTLQNILEA.KEM.GAEWPK.VGATLALMWLKR...L
Retrocopy DCLGSPVFTPIEADISGNITKIKAVYNTDPAEFRTLQNILEAQKEMDGAEWPK<VGATLALMWLKRT--L

Parental  RFIQVFLQSICDGERDENHPNLIRVNAPR-YEMALKKYHGWIVQKIFQAALYAAPYKSDFLKALS-KGQN
          RF..VFLQSICDGERDE.HPNLIR.NA...YEMALK..HGWIVQKIFQAAL.AAP.KSDFLKALS..GQ.
Retrocopy RFT*VFLQSICDGERDESHPNLIRINATKAYEMALKN-HGWIVQKIFQAALCAAPCKSDFLKALS<QGQP

Parental  -VTEEECLEKVRLFLVNYTATIDVIYEMYTKMNADLNYKV
          .VTEE.C.EKVRL.LV.YTAT.DVI.EMYTKMNA.LNYKV
Retrocopy <VTEEVCPEKVRLLLVSYTATVDVI*EMYTKMNAELNYKV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2397 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 10 parental genes, and 15 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000034092	1 retrocopy	retro_cjac_1284,
Echinops telfairi	ENSETEG00000016033	1 retrocopy	retro_etel_1197,
Homo sapiens	ENSG00000139433	1 retrocopy	retro_hsap_755,
Myotis lucifugus	ENSMLUG00000005823	2 retrocopies	retro_mluc_1031, retro_mluc_689,
Myotis lucifugus	ENSMLUG00000012545	5 retrocopies	retro_mluc_1056, retro_mluc_1902, retro_mluc_2135, retro_mluc_2397 , retro_mluc_658,
Macaca mulatta	ENSMMUG00000022761	1 retrocopy	retro_mmul_2261,
Pongo abelii	ENSPPYG00000004939	1 retrocopy	retro_pabe_28,
Pan troglodytes	ENSPTRG00000005431	1 retrocopy	retro_ptro_41,
Rattus norvegicus	ENSRNOG00000001192	1 retrocopy	retro_rnor_2465,
Ictidomys tridecemlineatus	ENSSTOG00000004484	1 retrocopy	retro_itri_973,