RetrogeneDB ID: retro_mluc_658

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429770:9748852..9749377(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: GLTP
• Ensembl ID: ENSMLUG00000012545
• Aliases: None
• Description: None

Sequence

>retro_mluc_658
GATTGCCTTGGGTCCCCAGTGTTTATGCCCATCAAGGCAGACGTAAGTGGTAACATCATGAAAATCAAAGCTGTGTACAA
TACCGACCCAGCCAAGTTCCGGACCCTGCAGAACATCCTGGAGGCGGAGAAGGAAATGTATGGAGCAGAGTGGCTCAAAG
TGGGGGCCACACTGGTGCTGATGTGGCTGAAAAAGGGCCTCCACTTCATCTAGGTCTTCCTGTGGAGCATCTGCGATGGG
GAGTGGGATGAGAGCCACCCCAACCTCATGCGTGTCAACGCCACCAAGGCCTACAGGATGGCGCTCAAGAAGTACCACAG
CTGGATCGTGCAGAAGATCTTCCAGGCAGCGCTGTATGCTGCGCCCTCCAAGTCTGACTTCCTGAAAGCACTCTCTAAGG
GCCAGAACGTGATGGAGGAGGAGTGCCTGAAGATGGTCCGCCTGTTACTGGTCAACTACACGGCCACCATTGACGTCACC
TAGGAGATGTACACCAAGATGAACACCGAGCTCAACTACAAGGTG

Alignment

ORF - retro_mluc_658 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 84.18 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  DCLGSPVFTPIKADISGNITKIKAVYNTDPAKFRTLQNILEAEKEMYGAEWPKVGATLALMWLKRRRGLR
          DCLGSPVF.PIKAD.SGNI.KIKAVYNTDPAKFRTLQNILEAEKEMYGAEW.KVGATL.LMWLK...GL.
Retrocopy DCLGSPVFMPIKADVSGNIMKIKAVYNTDPAKFRTLQNILEAEKEMYGAEWLKVGATLVLMWLKK--GLH

Parental  FIQVFLQSICDGERDENHPNLIRVNAPR-YEMALKKYHGWIVQKIFQAALYAAPYKSDFLKALSKGQNVT
          FI.VFL.SICDGE.DE.HPNL.RVNA...Y.MALKKYH.WIVQKIFQAALYAAP.KSDFLKALSKGQNV.
Retrocopy FI*VFLWSICDGEWDESHPNLMRVNATKAYRMALKKYHSWIVQKIFQAALYAAPSKSDFLKALSKGQNVM

Parental  EEECLEKVRLFLVNYTATIDVIYEMYTKMNADLNYKV
          EEECL..VRL.LVNYTATIDV..EMYTKMN..LNYKV
Retrocopy EEECLKMVRLLLVNYTATIDVT*EMYTKMNTELNYKV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_658 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 10 parental genes, and 15 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000034092	1 retrocopy	retro_cjac_1284,
Echinops telfairi	ENSETEG00000016033	1 retrocopy	retro_etel_1197,
Homo sapiens	ENSG00000139433	1 retrocopy	retro_hsap_755,
Myotis lucifugus	ENSMLUG00000005823	2 retrocopies	retro_mluc_1031, retro_mluc_689,
Myotis lucifugus	ENSMLUG00000012545	5 retrocopies	retro_mluc_1056, retro_mluc_1902, retro_mluc_2135, retro_mluc_2397, retro_mluc_658 ,
Macaca mulatta	ENSMMUG00000022761	1 retrocopy	retro_mmul_2261,
Pongo abelii	ENSPPYG00000004939	1 retrocopy	retro_pabe_28,
Pan troglodytes	ENSPTRG00000005431	1 retrocopy	retro_ptro_41,
Rattus norvegicus	ENSRNOG00000001192	1 retrocopy	retro_rnor_2465,
Ictidomys tridecemlineatus	ENSSTOG00000004484	1 retrocopy	retro_itri_973,