RetrogeneDB ID: retro_mluc_2399

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430313:40425..41113(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000030545
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000025440
• Aliases: None
• Description: None

Sequence

>retro_mluc_2399
AGAAAAGGAGTGTTCCGGGAACCCTACCTCGCTGAAATCCCCCCAGCGACGGATTGGCGAAAAGAAGGCTATGTCACTCC
CGTGAAGAACCAGGGTCACTGTGGTTCTCGTTGGGCATTTAGTGCAACTGGTGCCCTTGAGGGACAGGTGTTCCGGAAAC
TGGCAAACTTATCTCACTGAGTGAGCAGAACCTTGTGGATGCTCTCAGGCTCAAGGCAATGAGGGCTGCAGTGGTGGCCG
AATGGAGAATGCCTTCCAGGATGGGAAGTCCAAAGGCAGCCTGGACTCAGAGGAGTTCTATCCACATCAAGCAAAGGGTG
GACCCTGCAGATACAGGCCTGAGGACTCCGTTGCCAATGACACTGGCTTCGTGGACATCCCTGGGCAGGAGGGTGCCCTC
GTGAAGGCAGTGGCAACCGTGGGGCCCATCTCGGTGGCTATAGATGCAAGCCGTCTTAGCTTCCGGTTCTGTGAAGGTGG
CATTTATTATGAGCAGCGCTGGAGCAGCGTGGATCTATTCTAGATCATGGTGGTTGGCTATGGCTTTGAAGGAGAAGATT
CAAGTAACAAATACTGGATTGTCAAGAACAGCTGGGGTGAAACTTGGAGCAAGAATGGCTACATGAAGATGGCCAAAGAC
CGGAACAACCACTGTGGAATCACCGCCGCGGCCAGCTGTCCTACTGTG

Alignment

ORF - retro_mluc_2399 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 79.91 %
• Parental protein coverage: 71.6 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  KRRVFREPYIAEIPTTVDWRKEGYVTPVKNQGHCGSCWAFSATGALEGQMFRK-TGKLISLSEQNLVD-C
          ...VFREPY.AEIP...DWRKEGYVTPVKNQGHCGS.WAFSATGALEGQ.FRK.TGKLISLSEQNLVD.C
Retrocopy RKGVFREPYLAEIPPATDWRKEGYVTPVKNQGHCGSRWAFSATGALEGQVFRK<TGKLISLSEQNLVD<C

Parental  SQAQGNEGCNGGLMDNAFQYVKSNGGLDSEDSYPYQATVGPCRYRPEDSVANVTGFVDVPGQESALMRAV
          SQAQGNEGC.GG.M.NAFQ..KS.G.LDSE..YP.QA..GPCRYRPEDSVAN.TGFVD.PGQE.AL..AV
Retrocopy SQAQGNEGCSGGRMENAFQDGKSKGSLDSEEFYPHQAKGGPCRYRPEDSVANDTGFVDIPGQEGALVKAV

Parental  ATVGPISVAIDASHFSFQFYEDGIYYERRCSSVDLDHGVLVVGYGFEGEDSSNNKYWIVKNSWGGTWGKN
          ATVGPISVAIDAS..SF.F.E.GIYYE.R.SSVDL.....VVGYGFEGEDSS.NKYWIVKNSWG.TW.KN
Retrocopy ATVGPISVAIDASRLSFRFCEGGIYYEQRWSSVDL-F*IMVVGYGFEGEDSS-NKYWIVKNSWGETWSKN

Parental  GYIKMAKDRNNHCGIATAASYPTV
          GY.KMAKDRNNHCGI..AAS.PTV
Retrocopy GYMKMAKDRNNHCGITAAASCPTV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2399 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 10 parental genes, and 13 retrocopies.

Species	Parental gene accession	Retrocopies number
Dipodomys ordii	ENSDORG00000019810	1 retrocopy	retro_dord_197,
Macropus eugenii	ENSMEUG00000002168	2 retrocopies	retro_meug_1349, retro_meug_1567,
Macropus eugenii	ENSMEUG00000014293	1 retrocopy	retro_meug_1873,
Macropus eugenii	ENSMEUG00000016209	2 retrocopies	retro_meug_159, retro_meug_1727,
Myotis lucifugus	ENSMLUG00000003975	1 retrocopy	retro_mluc_2231,
Myotis lucifugus	ENSMLUG00000025440	1 retrocopy	retro_mluc_2399 ,
Macaca mulatta	ENSMMUG00000013861	1 retrocopy	retro_mmul_1669,
Monodelphis domestica	ENSMODG00000002844	1 retrocopy	retro_mdom_1101,
Petromyzon marinus	ENSPMAG00000003453	1 retrocopy	retro_pmar_7,
Tarsius syrichta	ENSTSYG00000002858	2 retrocopies	retro_tsyr_150, retro_tsyr_603,