RetrogeneDB ID:

retro_meug_159

Retrocopy
location
Organism:Wallaby (Macropus eugenii)
Coordinates:GeneScaffold_4690:94500..95504(-)
Located in intron of:ENSMEUG00000004118
Retrocopy
information
Ensembl ID:ENSMEUG00000004179
Aliases:None
Status:KNOWN_PSEUDOGENE
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSMEUG00000016209
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_meug_159
ATGAATTTCTACCTGTGTTTAGCTTCCCTATGCTTGGGGATAGCAGCTGCTGCTCCACAATTTGACCAGACTTTAGATGC
TAAGTGGTATCAATGGAAGTCACAACACAGAAGGACCTATGGAGCGAATGAAGATAATTGGAGGAGAGCAACATGGGAGA
AGAATTTGAGAATGACTGAAATGCACAATCTGGAGTACAGTGCTGGCAAACATGGTTTCCAGATGGAAATGAACAAGTTT
GGAGATATGACCAATGAGGAATTCAGACAAGTGATGAATGGTTTTAGACATGATAGATTTCAGAGGAAGGCCAAAGGAAA
TCTGTTTCGTGAACCTTTCTTTGTAAAGATCCCTAAATCTGTAGACTGGAGAGAAAAAGGCTATGTAACTGCTGTAAGAA
TCAGGGTCAGTGTGGTTCTTGCTGGGTATTTAGTGCAACTGGTACCCTGGAAGGCCAGTGGTTCCATAAGACAGGGAAAC
TTGTTCCACTTAGTGAATAGAATTTGGTTGACTGCTCTAAGGATGATGGTAATGAAGGCTGTAATGGTGGTTTAATGGAT
AATGCCTTTCTATATGTGAAGAAAAATAAAGGCATTGATACAGAGGAAACCTATCCATACGAAGCAAAGGATGGCAGCTG
TCATTATCGGCCAGAATGCTCCAGTGTCTATGTCACTGGATTTGTGGATATCCCATCAGGGCAGGAAAATGCTCTTAAAA
AGGCTGTAGCAACCGTGGGTCCCATCTCTGTGGCTGTTGATGCAGGACATACATCCTTCCAATTCTATCGGTCTGGGGTT
TATTATGAACCTGAATGCAGTAGTCAACAGCGGGATCATGGCATATTTGTTGTGGGCTATGGTGTGGAGGGAAAAAATGG
AAAGAAATACTGGATTGTCAAGAACAGCTGGGGTGAAGAGTGGGGTGACAAGGGGTACATTTTGATGAGCAGGGACCAGA
GTAACCACTGTGGAATAGCAACTGCAGCCAGCTATCCTGAAGTA

ORF - retro_meug_159 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 72.32 %
Parental protein coverage: 100. %
Number of stop codons detected: 1
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalMNFYLCLASLCLGIAAAAPQLDPTLDAKWEQWKSQHRRTYGGNEDNWRRATWEKNLRMIEMHNLEYRAGK
MNFYLCLASLCLGIAAAAPQ.D.TLDAKW.QWKSQHRRTYG.NEDNWRRATWEKNLRM.EMHNLEY.AGK
RetrocopyMNFYLCLASLCLGIAAAAPQFDQTLDAKWYQWKSQHRRTYGANEDNWRRATWEKNLRMTEMHNLEYSAGK
ParentalHSFRMEMNKFGDMTNEEFRQVMNGFQKRDFK---KGNLFREPPFVKIPESIDWRKKGAVTP-AKNQGVCG
H.F.MEMNKFGDMTNEEFRQVMNGF....F....KGNLFREP.FVKIP.S.DWR.KG.VT...KNQG.CG
RetrocopyHGFQMEMNKFGDMTNEEFRQVMNGFRHDRFQRKAKGNLFREPFFVKIPKSVDWREKGYVTA<CKNQGQCG
ParentalSSWAFSATGSLEGQWFLKTGKLVSLSEQNLVDCSAAEGSCGCETGSPENAFVYVKEHGGIDTEESYPYIG
S.W.FSATG.LEGQWF.KTGKLV.LSE.NLVDCS...G..GC..G...NAF.YVK...GIDTEE.YPY..
RetrocopySCWVFSATGTLEGQWFHKTGKLVPLSE*NLVDCSKDDGNEGCNGGLMDNAFLYVKKNKGIDTEETYPYEA
ParentalMVGNCQYKAETAGANVTGYVDLPQ-LESALKMAVATVGPISVYIDAGHLSFRFYESGVYYEPECSSYELT
..G.C.Y..E.....VTG.VD.P...E.ALK.AVATVGPISV..DAGH.SF.FY.SGVYYEPECSS....
RetrocopyKDGSCHYRPECSSVYVTGFVDIPSGQENALKKAVATVGPISVAVDAGHTSFQFYRSGVYYEPECSSQQRD
ParentalHYMLVVGYNVDEGTEEKYWIVKNSWGEDWGDKGYISMARDEYNHCGIATEATYPKV
H...VVGY.V......KYWIVKNSWGE.WGDKGYI.M.RD..NHCGIAT.A.YP.V
RetrocopyHGIFVVGYGVEGKNGKKYWIVKNSWGEEWGDKGYILMSRDQSNHCGIATAASYPEV

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Macropus eugenii was not studied using RNA-Seq expression data.
Macropus eugenii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_meug_159 retrocopy.
Macropus eugenii was not studied using FANTOM5 data.
retro_meug_159 was not experimentally validated.

Retrocopy orthology:
Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 18 parental genes, and 30 retrocopies.

Species Parental gene accession Retrocopies number
Canis familiaris ENSCAFG000000011491 retrocopy
Choloepus hoffmanni ENSCHOG000000075488 retrocopies
Dasypus novemcinctus ENSDNOG000000120371 retrocopy
Dipodomys ordii ENSDORG000000198101 retrocopy
Echinops telfairi ENSETEG000000079771 retrocopy
Macropus eugenii ENSMEUG000000021682 retrocopies
Macropus eugenii ENSMEUG000000142931 retrocopy
Macropus eugenii ENSMEUG00000016209 2 retrocopies
retro_meug_159 , retro_meug_1727,
Myotis lucifugus ENSMLUG000000039751 retrocopy
Myotis lucifugus ENSMLUG000000254401 retrocopy
Macaca mulatta ENSMMUG000000138611 retrocopy
Monodelphis domestica ENSMODG000000028441 retrocopy
Otolemur garnettii ENSOGAG000000013492 retrocopies
Ochotona princeps ENSOPRG000000010302 retrocopies
Petromyzon marinus ENSPMAG000000034531 retrocopy
Tupaia belangeri ENSTBEG000000164061 retrocopy
Tarsius syrichta ENSTSYG000000028582 retrocopies
Vicugna pacos ENSVPAG000000043971 retrocopy



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