RetrogeneDB ID: | retro_meug_159 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | GeneScaffold_4690:94500..95504(-) | ||
Located in intron of: | ENSMEUG00000004118 | ||
Retrocopyinformation | Ensembl ID: | ENSMEUG00000004179 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSMEUG00000016209 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 72.32 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MNFYLCLASLCLGIAAAAPQLDPTLDAKWEQWKSQHRRTYGGNEDNWRRATWEKNLRMIEMHNLEYRAGK |
MNFYLCLASLCLGIAAAAPQ.D.TLDAKW.QWKSQHRRTYG.NEDNWRRATWEKNLRM.EMHNLEY.AGK | |
Retrocopy | MNFYLCLASLCLGIAAAAPQFDQTLDAKWYQWKSQHRRTYGANEDNWRRATWEKNLRMTEMHNLEYSAGK |
Parental | HSFRMEMNKFGDMTNEEFRQVMNGFQKRDFK---KGNLFREPPFVKIPESIDWRKKGAVTP-AKNQGVCG |
H.F.MEMNKFGDMTNEEFRQVMNGF....F....KGNLFREP.FVKIP.S.DWR.KG.VT...KNQG.CG | |
Retrocopy | HGFQMEMNKFGDMTNEEFRQVMNGFRHDRFQRKAKGNLFREPFFVKIPKSVDWREKGYVTA<CKNQGQCG |
Parental | SSWAFSATGSLEGQWFLKTGKLVSLSEQNLVDCSAAEGSCGCETGSPENAFVYVKEHGGIDTEESYPYIG |
S.W.FSATG.LEGQWF.KTGKLV.LSE.NLVDCS...G..GC..G...NAF.YVK...GIDTEE.YPY.. | |
Retrocopy | SCWVFSATGTLEGQWFHKTGKLVPLSE*NLVDCSKDDGNEGCNGGLMDNAFLYVKKNKGIDTEETYPYEA |
Parental | MVGNCQYKAETAGANVTGYVDLPQ-LESALKMAVATVGPISVYIDAGHLSFRFYESGVYYEPECSSYELT |
..G.C.Y..E.....VTG.VD.P...E.ALK.AVATVGPISV..DAGH.SF.FY.SGVYYEPECSS.... | |
Retrocopy | KDGSCHYRPECSSVYVTGFVDIPSGQENALKKAVATVGPISVAVDAGHTSFQFYRSGVYYEPECSSQQRD |
Parental | HYMLVVGYNVDEGTEEKYWIVKNSWGEDWGDKGYISMARDEYNHCGIATEATYPKV |
H...VVGY.V......KYWIVKNSWGE.WGDKGYI.M.RD..NHCGIAT.A.YP.V | |
Retrocopy | HGIFVVGYGVEGKNGKKYWIVKNSWGEEWGDKGYILMSRDQSNHCGIATAASYPEV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000001149 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000007548 | 8 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000012037 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000019810 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000007977 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000002168 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000014293 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000016209 | 2 retrocopies |
retro_meug_159 , retro_meug_1727,
|
Myotis lucifugus | ENSMLUG00000003975 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000025440 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000013861 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000002844 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000001349 | 2 retrocopies | |
Ochotona princeps | ENSOPRG00000001030 | 2 retrocopies | |
Petromyzon marinus | ENSPMAG00000003453 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000016406 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000002858 | 2 retrocopies | |
Vicugna pacos | ENSVPAG00000004397 | 1 retrocopy |