RetrogeneDB ID: | retro_meug_1727 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold55024:11066..11931(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMEUG00000013860 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSMEUG00000016209 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 60.54 % |
Parental protein coverage: | 87.01 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | EDNWR--RATWEKNLRMIEMHNLEYR-AGKHSFRMEMNKFGDMTNEEFRQVMNGFQKRDFKKGNLFR-EP |
.D.WR..RATWEKNL..IEMHNLE.R..GK.SF.MEMNKFGDMTNEEF.QV.NG.....F........E. | |
Retrocopy | KDLWRE*RATWEKNLKKIEMHNLE*R<TGKCSFWMEMNKFGDMTNEEFKQVRNGLRHERFQMNTRGT*EH |
Parental | PFVKIPESIDWRKKGAVTPAKNQGVCGSSWAFSATGSLEGQWFLKTGKLVSLSEQNLVDCSAAEGSCGCE |
.F..IPE.ID...KG..T..K.Q...GSSW.FS.TGSLEGQWF.K..KLVSLSEQNL.DCS......GC. | |
Retrocopy | LFEQIPEPID*KDKGYITSVKDQ---GSSWVFSTTGSLEGQWFYKSDKLVSLSEQNLMDCSWDDINIGCH |
Parental | TGSPENAFVYVKEHGGIDTEESYPYIGMVGNCQYKAETAGANVTGYVDLPQ-LESALKMAVATVGPISVY |
.G....A..Y.KE.G.IDTEESYP.....GN..YK.ET..ANVTGYVD.P...ES.L..AVAT.GPISV. | |
Retrocopy | GGLMDHALEYMKENGSIDTEESYPCLRLDGNYWYKPETSAANVTGYVDIPSGRESTLTEAVATMGPISVA |
Parental | IDAGHLSFRFYESGVYYEPECSSYELTHYMLVVGYNVDEGT-EEKYWIVKNSWGEDWGDKGYISMARDEY |
.DA...SF.F.ESGVYYEP.CSS..L.H..LVVG....E.T..EKYWIVKNS..EDWG...YI.MARD.. | |
Retrocopy | TDAERPSFQFNESGVYYEPHCSSQNLNHAVLVVGCAAAEDT<VEKYWIVKNSYEEDWGNYVYIVMARDQD |
Parental | NHCGIATEATYPKV |
NHCGIA..A..P.V | |
Retrocopy | NHCGIAALASCPEV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000001149 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000007548 | 8 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000012037 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000019810 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000007977 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000002168 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000014293 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000016209 | 2 retrocopies |
retro_meug_159, retro_meug_1727 ,
|
Myotis lucifugus | ENSMLUG00000003975 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000025440 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000013861 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000002844 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000001349 | 2 retrocopies | |
Ochotona princeps | ENSOPRG00000001030 | 2 retrocopies | |
Petromyzon marinus | ENSPMAG00000003453 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000016406 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000002858 | 2 retrocopies | |
Vicugna pacos | ENSVPAG00000004397 | 1 retrocopy |