RetrogeneDB ID: | retro_mmul_50 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | X:114147984..114148527(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMMUG00000019688 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ARF4 | ||
Ensembl ID: | ENSMMUG00000018617 | ||
Aliases: | None | ||
Description: | ADP-ribosylation factor 4 [Source:RefSeq peptide;Acc:NP_001182511] |
Percent Identity: | 98.89 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGG |
MGLTISSLFSRLFGKKQM.ILMVGL.AAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGG | |
Retrocopy | MGLTISSLFSRLFGKKQMCILMVGLIAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGG |
Parental | QDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAVLLLFANKQDLPNAMAISEMT |
QDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAVLLLFANKQDLPNAMAISEMT | |
Retrocopy | QDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAVLLLFANKQDLPNAMAISEMT |
Parental | DKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR |
DKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR | |
Retrocopy | DKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 1 .34 RPM | 30 .59 RPM |
SRP007412_brain_prefrontal_cortex | 0 .08 RPM | 29 .99 RPM |
SRP007412_cerebellum | 3 .04 RPM | 33 .90 RPM |
SRP007412_heart | 1 .83 RPM | 20 .37 RPM |
SRP007412_kidney | 3 .99 RPM | 38 .85 RPM |
SRP007412_liver | 1 .03 RPM | 32 .78 RPM |
SRP007412_testis | 1 .66 RPM | 41 .95 RPM |