RetrogeneDB ID: | retro_mmul_661 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 1099214022667:240..606(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMMUG00000012699 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSMMUG00000013088 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 86.18 % |
Parental protein coverage: | 99.19 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | RKFTEKHEWITTENGIGTVGISNFAQEALGDVVYCSLPEVGTKLNKQDEFGALESVKAASELYSPLSGEV |
R........ITTENGIGT.GISNFAQEALGDV.YCSLPEVGTK.NKQ.EFGALESVKAASELYSPLSGEV | |
Retrocopy | RCVNSQRNMITTENGIGTLGISNFAQEALGDV-YCSLPEVGTKVNKQHEFGALESVKAASELYSPLSGEV |
Parental | TEINEALAENPGLVNKSCYEDGWLIKMTLSNPSELDELMSEEAYEKYIKSIEE |
TEINE.L.ENPGLVNKS.YEDGWLIKMTLSNPSEL.ELMSEEAYE.YIKSIEE | |
Retrocopy | TEINETLGENPGLVNKSSYEDGWLIKMTLSNPSELEELMSEEAYERYIKSIEE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 8 .74 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 5 .08 RPM |
SRP007412_cerebellum | 0 .00 RPM | 8 .78 RPM |
SRP007412_heart | 0 .00 RPM | 7 .95 RPM |
SRP007412_kidney | 0 .00 RPM | 27 .23 RPM |
SRP007412_liver | 0 .00 RPM | 15 .64 RPM |
SRP007412_testis | 0 .00 RPM | 37 .66 RPM |