RetrogeneDB ID: | retro_mmus_3062 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 7:97654366..97654691(-) | ||
Located in intron of: | ENSMUSG00000086993 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Gcsh | ||
Ensembl ID: | ENSMUSG00000034424 | ||
Aliases: | Gcsh, 1100001L02Rik, 5730591C18Rik | ||
Description: | glycine cleavage system protein H (aminomethyl carrier) [Source:MGI Symbol;Acc:MGI:1915383] |
Percent Identity: | 81.82 % |
Parental protein coverage: | 64.12 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | SAAAVRSLRT-GSALLSVRKFTEKHEWITTEEGIGTVGISNFAQEALGDVVYCSLPEVGTKLKKQEEFGA |
SAAAV.SL.T..SALLSV.KFTEK..WITTE.GIGTVGI.NFAQE..GDVVYC.LPEVG.KLKKQEEFG. | |
Retrocopy | SAAAVHSLCT>TSALLSVHKFTEKLQWITTEDGIGTVGIGNFAQEN-GDVVYCTLPEVGIKLKKQEEFGT |
Parental | LESVKAASELYSPLSGEVTEVNEALAENPGLVNKSCYEDG |
LESVKAASEL.SPLSGEVTEV.EA.AE.PGLVNKSC.E.G | |
Retrocopy | LESVKAASELSSPLSGEVTEVSEAIAEDPGLVNKSC*EGG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .09 RPM | 28 .15 RPM |
SRP007412_cerebellum | 0 .13 RPM | 22 .88 RPM |
SRP007412_heart | 0 .06 RPM | 40 .91 RPM |
SRP007412_kidney | 0 .08 RPM | 63 .89 RPM |
SRP007412_liver | 0 .00 RPM | 80 .86 RPM |
SRP007412_testis | 0 .14 RPM | 6 .91 RPM |