RetrogeneDB ID:

retro_mmur_1387

Retrocopy
location
Organism:Mouse Lemur (Microcebus murinus)
Coordinates:scaffold_52524:3288..3615(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:C15orf40
Ensembl ID:ENSMICG00000009564
Aliases:None
Description:chromosome 15 open reading frame 40 [Source:HGNC Symbol;Acc:28443]


Retrocopy-Parental alignment summary:






>retro_mmur_1387
CAGAGCAAGGAACCAGAGAGACCGCTTCCTCCCTCAGCTCCTGTGGCTGTTGATCCTAAAGGTTGTGTCACCATAGCCAA
TCTTGCCAAACCTGGCTCCACACGAAACGCCGTCACAGATCTGACGGCAGAGGCCGCGAGTGTAGCCACTGCGGCTCCCG
GGTCCGAGGGAGAGGCTGATGCCCGGCTCTGTCCGCATCTGTCCACGGTCTCAGAACTCAGGAAGAGTGATGTGGCTTTG
GATAACGGTGGTAAATCTCGTGAGAAGGTGGTGAAACTTTTGGCCCTCCACGCCACTTCAGAAGAGATCTTGGAGAAGTC
AAAAAAG

ORF - retro_mmur_1387 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 78.9 %
Parental protein coverage: 97.3 %
Number of stop codons detected: 0
Number of frameshifts detected: 0


Retrocopy - Parental Gene Alignment:

ParentalQNKEPERPLPPLAPVAVDPKGCVTIAIHAKPGSKQNAITDLTAEAVSVAIAAPPSEGEANAELCRYLSKV
Q.KEPERPLPP.APVAVDPKGCVTIA..AKPGS..NA.TDLTAEA.SVA.AAP.SEGEA.A.LC..LS.V
RetrocopyQSKEPERPLPPSAPVAVDPKGCVTIANLAKPGSTRNAVTDLTAEAASVATAAPGSEGEADARLCPHLSTV
ParentalLELRKSDVVLDKGGKSREKVVKLLA-STTPEEILEKLKK
.ELRKSDV.LD.GGKSREKVVKLLA...T.EEILEK.KK
RetrocopySELRKSDVALDNGGKSREKVVKLLALHATSEEILEKSKK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Microcebus murinus was not studied using ChIP-Seq data.

EST - click to see more details

No EST(s) were mapped for retro_mmur_1387 retrocopy.

TSS - click to see more details

Microcebus murinus was not studied using FANTOM5 data.

Lab - click to see more details

retro_mmur_1387 was not experimentally validated.

Retrocopy orthology:
Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 19 parental genes, and 30 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000165222 retrocopies
retro_btau_1724, retro_btau_485,
Canis familiaris ENSCAFG000000131852 retrocopies
retro_cfam_39, retro_cfam_420,
Callithrix jacchus ENSCJAG000000158772 retrocopies
retro_cjac_1108, retro_cjac_4086,
Equus caballus ENSECAG000000224591 retrocopy
retro_ecab_374,
Homo sapiens ENSG000001696091 retrocopy
retro_hsap_1881,
Gorilla gorilla ENSGGOG000000230621 retrocopy
retro_ggor_1378,
Microcebus murinus ENSMICG00000009564 2 retrocopies
retro_mmur_1387 , retro_mmur_1601,
Myotis lucifugus ENSMLUG000000075151 retrocopy
retro_mluc_2487,
Macaca mulatta ENSMMUG000000158901 retrocopy
retro_mmul_664,
Monodelphis domestica ENSMODG000000193741 retrocopy
retro_mdom_145,
Nomascus leucogenys ENSNLEG000000109301 retrocopy
retro_nleu_1803,
Oryctolagus cuniculus ENSOCUG000000050721 retrocopy
retro_ocun_211,
Procavia capensis ENSPCAG000000164461 retrocopy
retro_pcap_51,
Pongo abelii ENSPPYG000000067371 retrocopy
retro_pabe_1561,
Rattus norvegicus ENSRNOG000000195142 retrocopies
retro_rnor_1547, retro_rnor_2334,
Sorex araneus ENSSARG000000063141 retrocopy
retro_sara_147,
Sarcophilus harrisii ENSSHAG000000179472 retrocopies
retro_shar_233, retro_shar_442,
Sus scrofa ENSSSCG000000301311 retrocopy
retro_sscr_221,
Tupaia belangeri ENSTBEG000000143876 retrocopies
retro_tbel_1151, retro_tbel_2000, retro_tbel_3071, retro_tbel_3546, retro_tbel_4182, retro_tbel_4371,


Copyright © RetrogeneDB 2014-2017