RetrogeneDB ID: retro_mmur_1526

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_7712:38542..39372(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: NMT1
• Ensembl ID: ENSMICG00000016650
• Aliases: None
• Description: N-myristoyltransferase 1 [Source:HGNC Symbol;Acc:7857]

Sequence

>retro_mmur_1526
ATGGCGGACGAGAGTGAGACAGCAGTGAAGCCGCCGGCACCTCTGCTGCCGCAGATGATGGAAGGGAAGGGAAACGGCCA
TGAACACTGCAGCGATTGAGAGAACGAGGAAGACAACAGCTACAACCGGGGTGGTTTGAGTCCAGCCAATGACACTGGAG
CCAAAAAGAAGAAAAAGAAACAATAAAAGAAGAAAGAAAAAGGCAGTGAGACAGATTCAGCCCAGGATCAGCCTGTGAAG
ATGAACTCCTTGCCAGCAGAGAGGATCCAGGAAATACAGAAGGCCATTGAGCTGTTCTCAGTGGGTCAGGGACCTGCCAA
AACCATGGAGGAGGCTAGCAAACGAAGCTACCAGTTCTGGGATACGCAGCCCGTCCCCATACTGGGCGAAGTGGTGAACA
CCCACGGTCCCGTGGAACCTGACAAAGACAACATCCGCCAGGAGCCCTATACCCTGCCCCAGGGCTTCACCTGGGATGCC
TTGGACCTGGGGACCGTGGTGTGCTAAAAGAACTATATACCCTCCTGAATGAGAACTATGTGGAAGATGATGACAACATG
TTCCGATTTGATTATTCCCCAGAATTTCTTTTGTGGGCTCTCCGGCCACCTGGCTGGCTCCCCGAGTGGCACTGCGGGGT
TCGAGTGGTTTCAAGTCGGAAACTGGTTGGGTTTATTAGCGCCATCCCAGCAAACATCCACGTCTATGACACAGAGAAGA
AGATGGTGGAGATTAACTTCCTGTGTGTACACAAGAAGCTGCGCTCCAAGAGGGTGGCTCCAGTCCTGATCCGAGAGATA
ACCAGGCGGGTTCACCTGGAGGGCATTTTC

Alignment

ORF - retro_mmur_1526 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 93.53 %
• Parental protein coverage: 55.73 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MADESETAVKPPAPLLPQMMEGNGNGHEHCSDCENEEDNSYNRGGLSPANDTGAKKKKKKQKKKKEKGSE
          MADESETAVKPPAPLLPQMMEG.GNGHEHCSD.ENEEDNSYNRGGLSPANDTGA..............SE
Retrocopy MADESETAVKPPAPLLPQMMEGKGNGHEHCSD*ENEEDNSYNRGGLSPANDTGAXXXXXXXXXXXXXXSE

Parental  TDSAQDQPVKMNSLPAERIQEIQKAIELFSVGQGPAKTMEEASKRSYQFWDTQPVPKLGEVVNTHGPVEP
          TDSAQDQPVKMNSLPAERIQEIQKAIELFSVGQGPAKTMEEASKRSYQFWDTQPVP.LGEVVNTHGPVEP
Retrocopy TDSAQDQPVKMNSLPAERIQEIQKAIELFSVGQGPAKTMEEASKRSYQFWDTQPVPILGEVVNTHGPVEP

Parental  DKDNIRQEPYTLPQGFTWDALDL-GDRGVLKELYTLLNENYVEDDDNMFRFDYSPEFLLWALRPPGWLPE
          DKDNIRQEPYTLPQGFTWDALDL.GDRGVLKELYTLLNENYVEDDDNMFRFDYSPEFLLWALRPPGWLPE
Retrocopy DKDNIRQEPYTLPQGFTWDALDL<GDRGVLKELYTLLNENYVEDDDNMFRFDYSPEFLLWALRPPGWLPE

Parental  WHCGVRVVSSRKLVGFISAIPANIHVYDTEKKMVEINFLCVHKKLRSKRVAPVLIREITRRVHLEGIF
          WHCGVRVVSSRKLVGFISAIPANIHVYDTEKKMVEINFLCVHKKLRSKRVAPVLIREITRRVHLEGIF
Retrocopy WHCGVRVVSSRKLVGFISAIPANIHVYDTEKKMVEINFLCVHKKLRSKRVAPVLIREITRRVHLEGIF

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_1526 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_1526 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000012649	1 retrocopy	retro_cjac_1366,
Microcebus murinus	ENSMICG00000016650	2 retrocopies	retro_mmur_1526 , retro_mmur_715,
Otolemur garnettii	ENSOGAG00000012938	1 retrocopy	retro_ogar_1822,
Tursiops truncatus	ENSTTRG00000006270	1 retrocopy	retro_ttru_561,