RetrogeneDB ID: retro_ttru_561

Retrocopy location

• Organism: Dolphin (Tursiops truncatus)
• Coordinates: GeneScaffold_2687:101357..102638(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: NMT1
• Ensembl ID: ENSTTRG00000006270
• Aliases: None
• Description: N-myristoyltransferase 1 [Source:HGNC Symbol;Acc:7857]

Sequence

>retro_ttru_561
GAGACAGATTCAGCCCAGGATCAGCCTGTTAAGATGAACTCTTTGCCAGCAGAGAGGATCCAGGAAATACAGAAGGCCAC
TGAACTTTTTTTGGTGGCTCAAGGGACCTGCAAAAACCATGGAGGAGGCTAGCAAGTGAGGCTACCAGTTCTGGGACATG
CAGCCCGTCCCCAAACTGGGAGAAGTTGTGAACATGCATGGTCCTGTGGAGCCTGACAAAGACAACATCCGCCAAGAGCC
CTACACCCTGCCCCAGGGCTTCACCTGGGACGCCTTGGATCAGGGGGACCGTGGTGTGCTGAAAGAACTATACATCCTCC
TGAACGAGAATTATGTGGAAGGTGATGACAACATGTTCCAATTTGATTATTCCCCAGAATTTCTTCTGTGGGCTCTCCGG
CTGCCTGCCTGGCTCCCCCAGTGGCACTGTGGTGTTGTAGTGGTCTCAAGTCAGAAACTGGTTGGATTCATCATCGCCAT
CCCAGAAAACATCCGTATCTATGACACAGAGAAGAAGATGGTAGAGGTCAACTTCTTGTGTGTCCATAAGAAGCTGCACT
CAAAGAGGGTGGCTCCAGTCCTGATGCGTGAGATAACCCAGAGGGTTCACCTGGAGGGCATCTTCCAAGCTGTTTACACT
GCTGGGATGGTATTACCAAAGCCTGTTGGCACCTGCAGGTACTAGCATCGGTCCCTAAACCCACGGAAGCTGAATGAAGT
GAAGTTTTCCCACTTGAGCAGAAATATGACCATGCAACACACCATGAAGTTCTACCAACTGCCAGAGATTCCCAAGACAG
CTGGGCCACAACCAATGGGAAAAAAGGACATTCCAGTAGTGCACCGGCTCCTCACCTGGTACCTGAAGCAGTTTCACCAC
ATGCCAGTCAGGAGCCAGGAGGAGGTGGAACATTGGTTCTACCTCCAGGAGAATATCACTGACACTTTTGTGGTGGAGAG
TGCAAACGGTGAGGTGACAGATGAGCGGAGCTTTTATACACTTCTGTCTACCATCATAAACCACCCAACCCACAAGAGTC
TAAAGGCTGCTTATTCTTTCTACAATATTCATATCCAGACCCCTCCTCTAGACCTTATGAGCAATGCCCTCGTTCTCACC
AACATGAAAGGGTTTGACATGTTCAATGCAGTGGATCTTATGGAGAACAAAACCTTCCTGAAGAAGCTCAAGTTCAGCAT
AGGGGACAGCAACCTACAGTATTATCTTAACAATTGGAAGTGCCCAGCATGCGGGCAGAGAAGGTTGGGCTGGTGTTACA
G

Alignment

ORF - retro_ttru_561 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 85.31 %
• Parental protein coverage: 86.09 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  ETDSAQDQPVKMNSLPAERIQEIQKAIELFSVGQG-PAKTMEEASKRSYQFWDTQPVPKLGEVVNTHGPV
          ETDSAQDQPVKMNSLPAERIQEIQKA.ELF.V.QG.PAKTMEEASK..YQFWD.QPVPKLGEVVN.HGPV
Retrocopy ETDSAQDQPVKMNSLPAERIQEIQKATELFLVAQG>PAKTMEEASK*GYQFWDMQPVPKLGEVVNMHGPV

Parental  EPDKDSIRQEPYTLPQDFAWDALDLGDRGVLKELYTLLNENYVEDDDNMFRFDYSPEFLLWALRPPGWLP
          EPDKD.IRQEPYTLPQ.F.WDALD.GDRGVLKELY.LLNENYVE.DDNMF.FDYSPEFLLWALR.P.WLP
Retrocopy EPDKDNIRQEPYTLPQGFTWDALDQGDRGVLKELYILLNENYVEGDDNMFQFDYSPEFLLWALRLPAWLP

Parental  QWHCGVRVVSSRKLVGFISAIPANIHIYDTEKKMVEINFLCVHKKLRSKRVAPVLIREITRRVHLEGIFQ
          QWHCGV.VVSS.KLVGFI.AIP.NI.IYDTEKKMVE.NFLCVHKKL.SKRVAPVL.REIT.RVHLEGIFQ
Retrocopy QWHCGVVVVSSQKLVGFIIAIPENIRIYDTEKKMVEVNFLCVHKKLHSKRVAPVLMREITQRVHLEGIFQ

Parental  AVYTAGVVLPKPVGTCRYWHRSLNPRKLIEVKFSHLSRNMTMQRTMKLYRLPETPKTAGLRPMEKKDIAV
          AVYTAG.VLPKPVGTCRY.HRSLNPRKL.EVKFSHLSRNMTMQ.TMK.Y.LPE.PKTAG..PM.KKDI.V
Retrocopy AVYTAGMVLPKPVGTCRY*HRSLNPRKLNEVKFSHLSRNMTMQHTMKFYQLPEIPKTAGPQPMGKKDIPV

Parental  VHKLLTQYLKQFHLTPVMSQEEVEHWFYPQENIIDTFVVENANGEVTDFLSFYTLPSTIMNHPTHKSLKA
          VH.LLT.YLKQFH..PV.SQEEVEHWFY.QENI.DTFVVE.ANGEVTD..SFYTL.STI.NHPTHKSLKA
Retrocopy VHRLLTWYLKQFHHMPVRSQEEVEHWFYLQENITDTFVVESANGEVTDERSFYTLLSTIINHPTHKSLKA

Parental  AYSFYNVHTQTPLLDLMSDALVLAKMKGFDVFNALDLMENKTFLEKLKFGIGDGNLQYYLYNWKC-PSMG
          AYSFYN.H.QTP.LDLMS.ALVL..MKGFD.FNA.DLMENKTFL.KLKF.IGD.NLQYYL.NWKC.PSM.
Retrocopy AYSFYNIHIQTPPLDLMSNALVLTNMKGFDMFNAVDLMENKTFLKKLKFSIGDSNLQYYLNNWKC<PSMR

Parental  AEKVGLVLQ
          AEKVGLVLQ
Retrocopy AEKVGLVLQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq

Tursiops truncatus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_ttru_561 retrocopy.

TSS

Tursiops truncatus was not studied using FANTOM5 data.

Lab

retro_ttru_561 was not experimentally validated.

Homology

Retrocopy orthology:

Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 4 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000012649	1 retrocopy	retro_cjac_1366,
Microcebus murinus	ENSMICG00000016650	2 retrocopies	retro_mmur_1526, retro_mmur_715,
Otolemur garnettii	ENSOGAG00000012938	1 retrocopy	retro_ogar_1822,
Tursiops truncatus	ENSTTRG00000006270	1 retrocopy	retro_ttru_561 ,