RetrogeneDB ID: retro_ogar_1822

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873568.1:6592317..6593134(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: NMT1
• Ensembl ID: ENSOGAG00000012938
• Aliases: None
• Description: N-myristoyltransferase 1 [Source:HGNC Symbol;Acc:7857]

Sequence

>retro_ogar_1822
TCAAGTCGGAAACTGGTTGGGTTTATTAGCGCCATCCCAGAGAAAATCTATGTCTATGACACAGAGAAGATGGTAGAAAT
TAACTTCTTATGTGTACATAAGAAGCTGCGGTCCAAGAGGATGGCTCCAGTCCTGCTAAGAGAGATAACCAGACGGGTTC
ACCTGGAGGGCATTTTCCAAGCTGTTTACATTGCTGGTGTGGGACTACCAAAACCTGTTGGCACCTGCAGGTACTGGCAT
TGGTCCCTAAACCCACGGAAGCTGATTGAAGTGCTAAGCAGAAATATGACCACACAGCCTCCCATGAAGCTCTTCCAACT
GCCAGAGACTCCCAAGACAGCTGGACTACCACCAATGGAAAAAAAGGACATTCTAGTAGTGCACCAGCTCCTCACCAGGT
AACTTGAAGCAGTTTCACCTCATGCCAGTCATGAACCAGGAGGAGGTGGAGCACTGGTTCTACCTCCAGGAGAATATCAT
TGACACTTTCGTGGATGCAAATGGAGAGGTGACAGATTTCCTGAGCTTTTATATTCTTCCCTCCACCATCATGAACCATC
CAACCCACATGAATCTAAAAGCTGCTTATTCTTTTAAAAAAGAATACACCCACACCCCTCTTCTAGACATCATGAGTGAT
GCCTTTGTTCTCCCCAAAATGAAAGGGTTTGACATGTTTAGTGCACTGGATTTCATGGAGAACAAAACTTTCCTGGAGAA
GTTCAAGTTCGGCATAGGGGACGGCAACCTGCAGTATTACCTTCACAATTGGAAGTGTCCCCGCGTGGGGGCAGAGAAGT
CTGGGCTGGTGCTACAA

Alignment

ORF - retro_ogar_1822 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 83.93 %
• Parental protein coverage: 56.25 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  SSRKLVGFISAIPAKIHVYDTEKKMVEINFLCVHKKLRSKRVAPVLIREITRRVHLEGIFQAVYTAGVVL
          SSRKLVGFISAIP.KI.VYDTEK.MVEINFLCVHKKLRSKR.APVL.REITRRVHLEGIFQAVY.AGV.L
Retrocopy SSRKLVGFISAIPEKIYVYDTEK-MVEINFLCVHKKLRSKRMAPVLLREITRRVHLEGIFQAVYIAGVGL

Parental  PKPVGTCRYWHRSLNPRKLIEVKFSHLSRNMTMQRTMKLYRLPETPKTAGLRPMEKKDIPVVHQLLTR-Y
          PKPVGTCRYWH.SLNPRKLIEV....LSRNMT.Q..MKL..LPETPKTAGL.PMEKKDI.VVHQLLTR..
Retrocopy PKPVGTCRYWHWSLNPRKLIEV----LSRNMTTQPPMKLFQLPETPKTAGLPPMEKKDILVVHQLLTR>N

Parental  LKQFHLTPVMNQEEVEHWFYPQENIIDTFVVENANGEVTDFLSFYTLPSTIMNHPTHKSLKAAYSFYNVH
          LKQFHL.PVMNQEEVEHWFY.QENIIDTFV...ANGEVTDFLSFY.LPSTIMNHPTH..LKAAYSF....
Retrocopy LKQFHLMPVMNQEEVEHWFYLQENIIDTFV--DANGEVTDFLSFYILPSTIMNHPTHMNLKAAYSFKKEY

Parental  TQTPLLDLMSDALVLAKMKGFDVFNALDLMENKTFLEKLKFGIGDGNLQYYLYNWKCPSMGAEKVGLVLQ
          T.TPLLD.MSDA.VL.KMKGFD.F.ALD.MENKTFLEK.KFGIGDGNLQYYL.NWKCP..GAEK.GLVLQ
Retrocopy THTPLLDIMSDAFVLPKMKGFDMFSALDFMENKTFLEKFKFGIGDGNLQYYLHNWKCPRVGAEKSGLVLQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_1822 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000012649	1 retrocopy	retro_cjac_1366,
Microcebus murinus	ENSMICG00000016650	2 retrocopies	retro_mmur_1526, retro_mmur_715,
Otolemur garnettii	ENSOGAG00000012938	1 retrocopy	retro_ogar_1822 ,
Tursiops truncatus	ENSTTRG00000006270	1 retrocopy	retro_ttru_561,