RetrogeneDB ID: retro_mmur_404

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: GeneScaffold_2841:36168..37132(+)
• Located in intron of: ENSMICG00000006924

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ANXA7
• Ensembl ID: ENSMICG00000013143
• Aliases: None
• Description: annexin A7 [Source:HGNC Symbol;Acc:545]

Sequence

>retro_mmur_404
AGTCAGCCCGCTTCGATGACTCAGGGCGCTCAAGGAACAGTCAGACCAGCTGCCAACTTCGATGCTATGATAGATGCAGA
AATTCTCCATAAAGCAATGAAGGGTTTTGGGACAGACGAGCAAGCCATTGTGGATGTTGTGGCCAACCGTTCCAAAGATC
AGAGGCAAAAAATTAAAGCAGCTTTTATACCACGTATGACGGGGATTTGATCAAAGATCTCAAATCAGAGTTAAGTGGAA
ATATGGAAGAACTAATCTTTGCCCTGTTCACGCCTCCTGCATATTACGATGCCTGGAGTTTACGGAACGCAGTGCAGGAG
CAGGAACTCAGGAACGCGTATTGACTGAGATTTTGTGCACAAGAACAAATCAGGAAATCCGAGAAATCGTCAGAGGTTAT
CAATCAGAATTAGGACGGGACCTTGAAAAGGACAGTAGGTCAGATACATCAGGGCCTTTTGAACGTTTACTTGCATCCAT
GTGCCAGGGAAATCGTGATGACAACCAGAGTGTAAACCACCAAATGGCTCAGGAAGATGCTCAGCATCTCTATCAAGCTG
GTGAGGGAAGACTAGGGACAGATGAATCTTGCTTTAACATGATCCTTGCCACGAGAAGCTTTCCTCAGCTGAAAGCTACC
ATGGAGGCTTATTCCAGGATGGCTAATCGAGATTTGTTAAACAGTGTGGGCCGTGAGTTTTCTGGGTTTGTTGAAAGTAG
TTTGAAGATCATCTTGCAGTGCGCCCTGAACCGCCCTGCCTTCTTTGCTGAGAGGCTCTACTACGCTATGAAAGGTGCTG
GCACAGATGACTCCACCCTGGTCAGGACTGTGGCCACTCGAAGTGAGATTGATCTTGTGCAGATAAAACAGATGTTTGCG
CAGATGTATCAGAAGACCCTGGGCACAATGCTTGCAAGTGACACGAGTGGAGATTATCGAAGGCTGCTTCTACCCATTGT
GGGC

Alignment

ORF - retro_mmur_404 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 85.8 %
• Parental protein coverage: 69.25 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  SEPAAMSQGTQGTIRAAANFDAMRDAEILRKAMKGFGTDEQAIEDVVANRSNDQRQKIKAAF-KTMYGKD
          S.PA.M.QG.QGT.R.AANFDAM.DAEIL.KAMKGFGTDEQAI.DVVANRS.DQRQKIKAAF..T.Y..D
Retrocopy SQPASMTQGAQGTVRPAANFDAMIDAEILHKAMKGFGTDEQAIVDVVANRSKDQRQKIKAAF<YTTYDGD

Parental  LIKDLKSELSGNMEELILALFMPSPYYDAWSLRNAMQ-GAGTQEHVLIEILCTRTNQDIREIVRCYQSEF
          LIKDLKSELSGNMEELI.ALF.P..YYDAWSLRNA.Q.GAGTQE.VL.EILCTRTNQ.IREIVR.YQSE.
Retrocopy LIKDLKSELSGNMEELIFALFTPPAYYDAWSLRNAVQ<GAGTQERVLTEILCTRTNQEIREIVRGYQSEL

Parental  GRDLEKDIRSDTSGHFERLLVSMCQGNRDENQSVNHQMAQEDAQRLYQAGEGRLGTDESCFNRILATRSF
          GRDLEKD.RSDTSG.FERLL.SMCQGNRD.NQSVNHQMAQEDAQ.LYQAGEGRLGTDESCFN.ILATRSF
Retrocopy GRDLEKDSRSDTSGPFERLLASMCQGNRDDNQSVNHQMAQEDAQHLYQAGEGRLGTDESCFNMILATRSF

Parental  PQLRATMEAYSRMANRDLLSSVGREFSGYVESGLKTILQCALNRPAFFAERLYCSMKGAGTDDSTLVRTA
          PQL.ATMEAYSRMANRDLL.SVGREFSG.VES.LK.ILQCALNRPAFFAERLY..MKGAGTDDSTLVRT.
Retrocopy PQLKATMEAYSRMANRDLLNSVGREFSGFVESSLKIILQCALNRPAFFAERLYYAMKGAGTDDSTLVRTV

Parental  VSRSEIDLVQKKQMFTQMYQKTLGTMIASDTSGDYRRLLLAIVG
          ..RSEIDLVQ.KQMF.QMYQKTLGTM.ASDTSGDYRRLLL.IVG
Retrocopy ATRSEIDLVQIKQMFAQMYQKTLGTMLASDTSGDYRRLLLPIVG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_404 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_404 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 9 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000014749	1 retrocopy	retro_cfam_1107,
Callithrix jacchus	ENSCJAG00000001720	3 retrocopies	retro_cjac_1288, retro_cjac_2174, retro_cjac_860,
Microcebus murinus	ENSMICG00000013143	2 retrocopies	retro_mmur_404 , retro_mmur_884,
Pteropus vampyrus	ENSPVAG00000013001	1 retrocopy	retro_pvam_1365,
Rattus norvegicus	ENSRNOG00000007136	1 retrocopy	retro_rnor_2446,
Ictidomys tridecemlineatus	ENSSTOG00000012433	1 retrocopy	retro_itri_1796,