RetrogeneDB ID: retro_pvam_1365

Retrocopy location

• Organism: Megabat (Pteropus vampyrus)
• Coordinates: scaffold_7107:55507..56346(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ANXA7
• Ensembl ID: ENSPVAG00000013001
• Aliases: None
• Description: annexin A7 [Source:HGNC Symbol;Acc:545]

Sequence

>retro_pvam_1365
CATACTGCTAGCCAGCCTGCTGTGATGACTCAGGGAGTTCAAGGAACAATCTGACCAGCTGCCAACTTCGATGCTGTGAG
AGGTGCAGCAATTCTTTGTAAAGCAATGAAGGGTTTGGGGACAGACGAACAGGCAATTGCGGACGTTGTGCCAACCGTTC
CAACGATCACAGGCAAAAAATTCAAGCAGCTTTTAAGACCATGAATGGCAAGGATTTAATCAAAGATCTCAAATCAGAGT
TAAGTGGAAATATGAAAGAACTGATCCTTGCCCTGTTCATGCCAACTGCATATTCAGATGCCTGGAGTTTACGGAATGCA
ATGAAAGGAGCAAGAACTCAGGAACGTGTATTGATTGAAATTTTATGCACAAGAACTAATCAGGAAATCTGAGAAATTGT
CAGATGTTATTAATTGGAATTTAGACGAGACTTTGAAAAGGACATTAGTTCAGATACATCAGGGCATTTTGAATGTTTAC
TTATACCCATGTGCCAGGGAAATTGTGGTGAGAACCAGAATGTTAACCACCAATTGGCTCAGGAAGATGCTCAGCATCTC
TCTCAAGCTGGCAAGGGAAGACTGGGGACAGATGAATCTAGTTTTAACATGTTTCTTGCCAGTAGAAGCTTTCTTCAGCT
GAAAGCTACCATGGAGGCCTATTCCAGGATGGCTAATAGAGATTTGTTAAGCTGTGTCAGCCGTGAGTTGTCAGAAATGT
TGAAAGTGGTTTGAAGATTATCTTGCAGTGTGCCCTGAACAGCTCTGCCTTCTTTGATGAGAGGCTCTACTATTCTATTA
AAGGTGCCGGCACAGATGACTCCACCCCTGGTCAGGATT

Alignment

ORF - retro_pvam_1365 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 81.27 %
• Parental protein coverage: 57.26 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  YSSESPSAMTQGVQGTIRPATNFDAMRDAEILRKAMKGFGTDEQAIVDVV-ANRSNDQRQKIKAAFKTMY
          .....P..MTQGVQGTI.PA.NFDA.R.A.IL.KAMKG.GTDEQAI.DVV.ANRSND.RQKI.AAFKTM.
Retrocopy HTASQPAVMTQGVQGTI*PAANFDAVRGAAILCKAMKGLGTDEQAIADVV<ANRSNDHRQKIQAAFKTMN

Parental  GKDLIKDLKSELSGNMEELILALFMPTTYYDAWSLRNAMKGAGTQERVLIEILCTRTNQEIREIVRCYQS
          GKDLIKDLKSELSGNM.ELILALFMPT.Y.DAWSLRNAMKGA.TQERVLIEILCTRTNQEI.EIVRCY..
Retrocopy GKDLIKDLKSELSGNMKELILALFMPTAYSDAWSLRNAMKGARTQERVLIEILCTRTNQEI*EIVRCY*L

Parental  EFGRDLEKDIRSDTSGHFERLLVSMCQGNRDENQNVNHQLAQEDAQRLYQAGEGRLGTDESCFNMILATR
          EF.RD.EKDI.SDTSGHFE.LL..MCQGN..ENQNVNHQLAQEDAQ.L.QAG.GRLGTDES.FNM.LA.R
Retrocopy EFRRDFEKDISSDTSGHFECLLIPMCQGNCGENQNVNHQLAQEDAQHLSQAGKGRLGTDESSFNMFLASR

Parental  SFPQLKATMDAYSRMANRDLLSSVGREFS-GNVESGLKTILQCALNRPAFFAERLYYSMKGAGTDDST-L
          SF.QLKATM.AYSRMANRDLLS.V.RE.S..NVESGLK.ILQCALN..AFF.ERLYYS.KGAGTDDST.L
Retrocopy SFLQLKATMEAYSRMANRDLLSCVSRELS<RNVESGLKIILQCALNSSAFFDERLYYSIKGAGTDDST>L

Parental  VRI
          VRI
Retrocopy VRI

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Pteropus vampyrus was not studied using RNA-Seq expression data.

ChIP-Seq

Pteropus vampyrus was not studied using ChIP-Seq data.

EST

Pteropus vampyrus was not studied using EST data.

TSS

Pteropus vampyrus was not studied using FANTOM5 data.

Lab

retro_pvam_1365 was not experimentally validated.

Homology

Retrocopy orthology:

Pteropus vampyrus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 8 parental genes, and 12 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000014749	1 retrocopy	retro_cfam_1107,
Callithrix jacchus	ENSCJAG00000001720	3 retrocopies	retro_cjac_1288, retro_cjac_2174, retro_cjac_860,
Microcebus murinus	ENSMICG00000013143	2 retrocopies	retro_mmur_404, retro_mmur_884,
Pteropus vampyrus	ENSPVAG00000006489	2 retrocopies	retro_pvam_536, retro_pvam_713,
Pteropus vampyrus	ENSPVAG00000011401	1 retrocopy	retro_pvam_389,
Pteropus vampyrus	ENSPVAG00000013001	1 retrocopy	retro_pvam_1365 ,
Rattus norvegicus	ENSRNOG00000007136	1 retrocopy	retro_rnor_2446,
Ictidomys tridecemlineatus	ENSSTOG00000012433	1 retrocopy	retro_itri_1796,