RetrogeneDB ID:

retro_mmus_49

Retrocopy
location
Organism:Mouse (Mus musculus)
Coordinates:17:33135727..33138796(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSMUSG00000048602
Aliases:Morc2b, 4932411A10Rik, Tce6
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:Morc2a
Ensembl ID:ENSMUSG00000034543
Aliases:Morc2a, 8430403M08Rik, Zcwcc1
Description:microrchidia 2A [Source:MGI Symbol;Acc:MGI:1921772]


Retrocopy-Parental alignment summary:






>retro_mmus_49
ATGGCGTTTACCAATTACAGCACTCTCAACCGGGCTCAACTAACCTTTGACTATCTACACACAAATTCAACTACCCATGC
ATTTTTGTTTGGTGCTCTTGCTGAACTGATTGATAATGCGAGGGATGCTGATGCCACCCGGATAGATATTTACGCTGAAA
AGCGAGAGGACCTTCAAGGAGGATTCATGCTTTGTTTTCTGGATAATGGAGTCGGAATGGATCCAAACGATGTCATCAAT
GTGATCCAGTTTGGGAAATCAGCCAAACGAACACCAGAGTCCACACAGATTGGGCGGTACGGGAATGGACTAAAATCAGG
CTCAATGCGTATTGGGAAGGATTTTATCCTCTTCACTAAGAAAGAAAACACCATGAGTTGCCTCTTCCTGTCTCGAACCT
TTCATGAGGAAGAAGGCATTGATGAGGTGATAGTCCCTTTGCCTACTTGGAATAGTCAGACACGAGAACCTGTCACAGAT
AACATGGAGAAGTTTGCCATTGAGACAGAGCTCATCTACAAGTATTCTCCCTTCCACACTGAGGAAGAAGTGATGACCCA
GTTTACAAAGATTTCTGGGACTAGTGGAACCCTGGTCGTCATTTTCAATCTCAAACTCACGGACAACGGAGAACCCGAAC
TAGACGTAACCTCAAATCCAAAAGATATCCGGATGGCAGAGATCTCCCAAGAAGGCGTGAAGCCAGAGCGGCACTCCTTC
TGTGCCTACGCTGCTGTGCTGTATATCGATCCTCGGATGAGGATTTTTATTCACGGGCACAAGGTGCAGACCAAAAAGCT
CTGCTGCTGCCTGTATAAACCCAGGAAGTACACCTTCACGTCACACCGTTTTAAGACCAGGGCAGAACAAGAGGTGAAGA
AGGCAGACCAGGTAGCACAGCTCGCGGAAGAGAAGGCCCGGGAAGCAGAGAGCAAAGCCCGTACATTAGAAATACACATG
GGTGGAGACATCACCCGGGACTCCAGGGTGATGTTGCGTCAGGTCCAGAATACAGCCATCACTCTCCGAAGAGAAGCTGA
TGTCAAGAAAAGGATCAGAGACGCCAAGCAGCAAGCACTCAAAGAACCTAAGGAGCTGACTTTTGTTTTTGGTGTCAACA
TTGAACACCGTGACCATGATGGCATGTTTATCTACAACTGTAGCCGCCTGATCAAAATGTATGAGAAAGTGGGCCCACAG
CTGGAAAAGGGCATGGTATGTGGTGGGGTTGTTGGAGTCATTGATGTGCCCTACTTGGTCCTGGAACCTACACATAACAA
GCAAGACTTTGCTGATGCCAAGGAGTACCGCCACCTTCTGCGGGCAATGGGGGAGCACCTGGCACAGTACTGGAAGGACA
TAGAAATTGCCCAGCATGGAATTATTAAGTTCTGGGATGAGTTTGGCTACCTTTCAGCTAACTGGAACAGACCCCCATCT
GATGAGTTGCATTTCAAACGCAAGAGGGCTATGCAAGTCCCAACCACTATACAGTGTGATTTATGTCTAAAGTGGAGGAC
CCTCCCCTTCCAGTTAAGTGCTGTAGAAGAAGGTTACCCCATCAACTGGGTTTGTTCCATGAACCCTGATCCTGAACAGG
ACCAGTGTGAGGCTTTTGAACTGAAGCAGAAGATTCCTCTGGGGATATTAAAAAAGGCCCCGAAGACACAGGAAGAAAGA
CAGAAGCAGCTGACAGAGAAAATTCAACAGGAGCAGAGGAAGCTTAAGGCCCTCAAGAAAATCAAGCCTATCCATTCACA
AAGCGACCTAAAAAAATTACCCTTGGAAGTGACTTCCAGACCTTTCTCCAAATATCCTGCTCATATATTTCAGGGTCCTC
AGTCGTCTTTCCATGTAGTAAAAACGAATGCCCGACGAAGACCTCAGTCCAGGCATGCTCCATTCAGACAGCTCCAAAGG
TCTTCTATCATCTGCACCAATCCAAAACCTCCTTTTCTGGTAGACAAAACAGAGGCTGTGCTGCTCCAGCCACCCGAGAC
ACCCCAAAAGTCAGTGAGCCTCCTGGTCAAAACTATACCCCAACCCCCACCTCTGGTACAATCCCTGTCACCATCTGTAG
TCCCCAAGTCCAACAACCCTTGGAAGGTCGAAACTCCCCAAATCATGAACACTCCAGTGGCCGAGATGCCATATGTACCT
GTTAATCCTTCACTGGTGATTTGTGATCATAAGCGGAGTCCTGAGGTCTCTGATGAAATAGAAGATGAAGACAGGAGGAA
GAGGATGTGCAAGCGGGGCAGGTTTACTGTGAAAAAAGAAAAGATTCAAGCAAGTGAGCTCTCAGACAGCTCTGGGGAAG
AGAATCCAGTTGACCTCAAGACAGCTCAGAAAGATAAAGGGCTGTATGTGGAGGTACGTATGATGGGAGAGTGCTACAAG
GGCCATGTCACAGCTGTGGAGGTGGGTGATAATGTGGTATGGTGGAAGGTCAAGTTTGAGGATATGCCCAAGGATAGCAC
ACCAAGAGACTGCTGGGTGGAAAAGGGCAGTGAAAATGTATGGCTAGTGAAGCCATCTCCAGAGTACCAGAGCACTGATG
AACAGCAAGAGGATAGAAAGGGGGAGGAGGACACTGTGGTCCAGCAGGCTTTGGCACTGCAGCAGACCTCCACCTCTGAA
TGCTTCTGCACTGAACCCGACACTACTGCCTCAACAGCCAACCACAAGACCATTGACCTCTTGGTCCAAATTCTCTGGAA
CTGCCTACATTATTTCATGCCTCTGAGTTTTCCCATATCCAAGAAGGAGCTAGGTGCCATGAATTCAGAAGAATTACTGT
CTCTCCCTCTGAAAGAGTGCTTCAAGCAATATGAAGTCGGACTCCAGAATCTCTGCCGCTCCTACCAAAGATGTGCTGAC
TCACAAGCCAAGGTCTCTGAGGAAAGCCTGCGCATCTCCCAGAAAAAACTCCAGGAAACAGAGGAGAAACTCCAGAAGCT
GAGGACCAACATTCAGACGCTCCTGCAAATGGCTCAGCAGGGCATAAACATCAGGGCAGATGATGAGCTAGATGCCTACA
TTGAGGATCTTGTCAGCAGTGATGACTGA

ORF - retro_mmus_49 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 73.16 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMAFTNYSSLNRAQLTFEYLHTNSTTHEFLFGALAELVDNARDADATRIDIYAERREDLRGGFMLCFLDDG
MAFTNYS.LNRAQLTF.YLHTNSTTH.FLFGALAEL.DNARDADATRIDIYAE.REDL.GGFMLCFLD.G
RetrocopyMAFTNYSTLNRAQLTFDYLHTNSTTHAFLFGALAELIDNARDADATRIDIYAEKREDLQGGFMLCFLDNG
ParentalAGMDPSDAASVIQFGKSAKRTPESTQIGQYGNGLKSGSMRIGKDFILFTKKEDTMTCLFLSRTFHEEEGI
.GMDP.D...VIQFGKSAKRTPESTQIG.YGNGLKSGSMRIGKDFILFTKKE.TM.CLFLSRTFHEEEGI
RetrocopyVGMDPNDVINVIQFGKSAKRTPESTQIGRYGNGLKSGSMRIGKDFILFTKKENTMSCLFLSRTFHEEEGI
ParentalDEVIVPLPTWNARTREPITDNVEKFAIETELVYKYSPFHTEEQVMNQFMKIPGNSGTLVIIFNLKLMDNG
DEVIVPLPTWN..TREP.TDN.EKFAIETEL.YKYSPFHTEE.VM.QF.KI.G.SGTLV.IFNLKL.DNG
RetrocopyDEVIVPLPTWNSQTREPVTDNMEKFAIETELIYKYSPFHTEEEVMTQFTKISGTSGTLVVIFNLKLTDNG
ParentalEPELDIISNPKDIQMAETSPEGTKPERRSFRAYAAVLYIDPRMRIFIHGHKVQTKRLSCCLYKPRMYKYT
EPELD..SNPKDI.MAE.S.EG.KPER.SF.AYAAVLYIDPRMRIFIHGHKVQTK.L.CCLYKPR.Y..T
RetrocopyEPELDVTSNPKDIRMAEISQEGVKPERHSFCAYAAVLYIDPRMRIFIHGHKVQTKKLCCCLYKPRKYTFT
ParentalSSRFKTRAEQEVKKAEHVARIAEEKAREAESKARTLEVRMGGDLTRDSRVMLRQVQNTAITLRREADVKK
S.RFKTRAEQEVKKA..VA..AEEKAREAESKARTLE..MGGD.TRDSRVMLRQVQNTAITLRREADVKK
RetrocopySHRFKTRAEQEVKKADQVAQLAEEKAREAESKARTLEIHMGGDITRDSRVMLRQVQNTAITLRREADVKK
ParentalRIKDAKQRALKEPKELNFVFGVNIEHRDLDGMFIYNCSRLIKMYEKVGPQLEGGMACGGVVGVVDVPYLV
RI.DAKQ.ALKEPKEL.FVFGVNIEHRD.DGMFIYNCSRLIKMYEKVGPQLE.GM.CGGVVGV.DVPYLV
RetrocopyRIRDAKQQALKEPKELTFVFGVNIEHRDHDGMFIYNCSRLIKMYEKVGPQLEKGMVCGGVVGVIDVPYLV
ParentalLEPTHNKQDFADAKEYRHLLRAMGEHLAQYWKDIAIAQRGIIKFWDEFGYLSANWNQPPSSELRFKRRRA
LEPTHNKQDFADAKEYRHLLRAMGEHLAQYWKDI.IAQ.GIIKFWDEFGYLSANWN.PPS.EL.FKR.RA
RetrocopyLEPTHNKQDFADAKEYRHLLRAMGEHLAQYWKDIEIAQHGIIKFWDEFGYLSANWNRPPSDELHFKRKRA
ParentalMEIPTTIQCDLCLKWRTLPFQLSSVETDYPDTWVCSMNPDPEQDRCEASEQKQKVPLGTLKKDPKTQEEK
M..PTTIQCDLCLKWRTLPFQLS.VE..YP..WVCSMNPDPEQD.CEA.E.KQK.PLG.LKK.PKTQEE.
RetrocopyMQVPTTIQCDLCLKWRTLPFQLSAVEEGYPINWVCSMNPDPEQDQCEAFELKQKIPLGILKKAPKTQEER
ParentalQKQLTEKIRQQQEKLEALQKTTPIRSQADLKKLPLEVTTRPIEE-PVRRPQRPRSPPLPAVIKNAPSRPP
QKQLTEKI.Q.Q.KL.AL.K..PI.SQ.DLKKLPLEVT.RP....P....Q.P.S.....V..NA..RP.
RetrocopyQKQLTEKIQQEQRKLKALKKIKPIHSQSDLKKLPLEVTSRPFSKYPAHIFQGPQS-SFHVVKTNARRRPQ
ParentalSIQTPRPSTQLRKTSVI-SLPKPPTTAARGETSTSRLLQPTEAPRKPANPPIKTVPRPTPPVHTPPLSLI
S.....P..QL...S.I...PKPP......E.....LLQP.E.P.K......KT.P.P.P.V.....S..
RetrocopySRHA--PFRQLQRSSIICTNPKPPFLVDKTE---AVLLQPPETPQKSVSLLVKTIPQPPPLVQSLSPSVV
ParentalPSSKSLREVPAQKAIKTPVVKKPEPPVKQSVATSGRKRSLAVSDEEEAEEEAEKRRERCKRGKLAVKEEK
P.S.....V.......TPV...P..PV..S......KRS..VSDE.E.E.....R...CKRG...VK.EK
RetrocopyPKSNNPWKVETPQIMNTPVAEMPYVPVNPSLVICDHKRSPEVSDEIEDE---DRRKRMCKRGRFTVKKEK
ParentalKEANELSDSAGEDHPAELRKAQKDKGLHVEVRVNREWYTGRVTAVEVGKNAVRWKVKFDYVPTDTTPRDR
..A.ELSDS.GE..P..L..AQKDKGL.VEVR...E.Y.G.VTAVEVG.N.V.WKVKF...P.D.TPRD.
RetrocopyIQASELSDSSGEENPVDLKTAQKDKGLYVEVRMMGECYKGHVTAVEVGDNVVWWKVKFEDMPKDSTPRDC
ParentalWVEKGSEDVRLMKPPSPEHQSPDTQQEGGEEEEAMVARQAVALPEPSTSDGLPIEPDTTATSPSHETIDL
WVEKGSE.V.L.K.PSPE.QS.D.QQE....EE..V..QA.AL...STS.....EPDTTA....H.TIDL
RetrocopyWVEKGSENVWLVK-PSPEYQSTDEQQEDRKGEEDTVVQQALALQQTSTSECFCTEPDTTASTANHKTIDL
ParentalLVQILRNCLRYFLPPSFPISKKELSVMNSEELISFPLKEYFKQYEVGLQNLCHSYQSRADSRAKASEESL
LVQIL.NCL.YF.P.SFPISKKEL..MNSEEL.S.PLKE.FKQYEVGLQNLC.SYQ..ADS.AK.SEESL
RetrocopyLVQILWNCLHYFMPLSFPISKKELGAMNSEELLSLPLKECFKQYEVGLQNLCRSYQRCADSQAKVSEESL
ParentalRTSEKKLRETEEKLQKLRTNIVALLQKVQEDIDINTDDELDAYIEDLITKGD
R.S.KKL.ETEEKLQKLRTNI..LLQ..Q..I.I..DDELDAYIEDL....D
RetrocopyRISQKKLQETEEKLQKLRTNIQTLLQMAQQGINIRADDELDAYIEDLVSSDD

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain 1 .59 RPM 56 .49 RPM
SRP007412_cerebellum 1 .30 RPM 59 .79 RPM
SRP007412_heart 0 .47 RPM 36 .33 RPM
SRP007412_kidney 0 .06 RPM 47 .68 RPM
SRP007412_liver 0 .00 RPM 30 .15 RPM
SRP007412_testis 345 .70 RPM 117 .05 RPM

ChIP-Seq - click to see more details

RNA Polymerase II actvity near the 5' end of retro_mmus_49 was not detected

EST - click to see more details

No EST(s) were mapped for retro_mmus_49 retrocopy.

TSS - click to see more details

No TSS is located nearby retro_mmus_49 retrocopy 5' end.

Lab - click to see more details

retro_mmus_49 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_mmus_49 has 0 orthologous retrocopies within eutheria group .

Parental genes homology:
Parental genes homology involve 5 parental genes, and 6 retrocopies.

Species Parental gene accession Retrocopies number
Cavia porcellus ENSCPOG000000064421 retrocopy
retro_cpor_17,
Monodelphis domestica ENSMODG000000095571 retrocopy
retro_mdom_1757,
Mus musculus ENSMUSG00000034543 1 retrocopy
retro_mmus_49 ,
Otolemur garnettii ENSOGAG000000099712 retrocopies
retro_ogar_2044, retro_ogar_282,
Rattus norvegicus ENSRNOG000000196241 retrocopy
retro_rnor_412,


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