RetrogeneDB ID:

retro_rnor_412

Retrocopy
location
Organism:Rat (Rattus norvegicus)
Coordinates:7:15650915..15653975(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSRNOG00000004501
Aliases:Morc2b, RGD1564020
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:Morc2
Ensembl ID:ENSRNOG00000019624
Aliases:Morc2, Morc2a, Zcwcc1
Description:MORC family CW-type zinc finger 2 [Source:RefSeq peptide;Acc:NP_001099486]


Retrocopy-Parental alignment summary:






>retro_rnor_412
ATGGCATTCACCAATTACAGCAGCCTCAACCGGGCTCAACTAACCTTTGAATATCTACACACAAACTCAACTACCCATGA
ATTTTTGTTTGGTGCTCTTGCTGAACTGGTTGATAACTCGAGAGATGCTGATGCCACCCGGATAGATATTTATGCTGAAA
GGCGAGAGGACCTTCAAGGAGGGTTCATGCTTTGTTTTCTGGATAATGGAGCAGGAATGGATCCAAATGATGCCATCAGT
GTAATCCAATTTGGGAAATCAGCCAAACGAACACCAGAGTCCACACAGATTGGGCGGTACGGGAATGGGCTAAAATCAGG
CTCAATGCGTATTGGAAAGGATTTTATCCTCTTCACGAAGAAGGAAGACACCATGAGCTGCCTCTTCCTGTCTCGGACCT
TTCATGAGGAAGAAGGCATTGACGAAGTGATAGTCCCTTTGCCTACTTGGAGTGCTCATACACGAGAACCTGTCACAGAC
AATGTGGAGAAGTTTGCCATCGAGACAGAACTCATCTACAAGTATTCTCCTTTCCACACTGAGGAAGAAGTGATGAACCA
GTTCACCAAGATTTCTGGGACCAGTGGAACCCTGGTGATCATTTTCAACCTCAAACTCATGGACAATGGGGAACCCGAAC
TAGACATAACCTCAAATCCAAAAGATATCCGGATGGCAGAGATCTCCCAGGAAGGCACGAAGCCAGAGCGGCACTCCTTC
TGCGCCTACGCGGCTGTGCTTTACATTGATCCTCGGATGAGGATTTTTATTCAAGGGCACAAGGTGCAGACCAAAAAGCT
CTCCTGCTGCTTGTACAAGCCCAGGAAGTACACATTCACATCAAGCCGTTTTAAGACCAGGGCGGAACAAGAGGTGAAGA
AAGCAGACCAGGTAGCACGGCTTGCCGAAGAGAAGGCCCGGGAAGCAGAGAGCAAATCTCATACTTTAGAAGTGCACATA
GGCGGAGACATCACCCGGGACTCGAGGGCGATGTTGCGCCAGGTCCAGAATACAGCCATCACCCTCCGAAGAGAAGCTGA
CGTCAAGAAAAGGATCCGAGACGCCAAAGAGCGAGCACTCAAAGAGCCCAAGGAACTGAATTTCGTTTTCGGGGTCAACA
TTGAACGCCGTGACCACGACGGCATGTTCATCTACAACTGTAGCCGCCTGATCAAGATGTATGAGAAAGTGGGCCCACAG
CTGGAAAAGGGGATGGCATGCGGTGGGGTTGTTGGAGTCATCGATGTGCCCTACTTGGTCCTAGAACCTACGCACAGCAA
GCAGGACTTTGCTGACGCCAAGGAGTACCGTCTGCTGCTGCGGGCAATGGGCGAGCACCTGGCACAGTACTGGAAGGACA
TCGCCATTACCCAGTACGGAATTATTAAGTTCTGGGATGAGTTTGGCTACCTTTCAGCTAACTGGAACAGACCTCCATCT
GAGGAGCTGCATTTCAAACGCAAGAGAGCTATGCAAGTCCCAACCACCATACAGTGTGATTTGTGTCTAAAGTGGAGAAC
CCTCCCCTTCCAGTTAAGTGCTGTAGAAGAAGGCTACCCAGACAACTGGGTTTGTTCCATGAACCCTGATCCTGAACAGG
ACCAGTGCGAGGCTTTTGAACAGACGCAGAAGATTCCTCTGGGGACATTAAAAAAGGTCCCAAAGACACAAGAAGAAAGG
CAGAAGCAGCTGACAGAGAAAATTCGCCAACATCAGAGGAAGCTTAAGGCCCTTAAGAAAATCAAGCCTATCCATTCCCA
AAGTGACCTGAAAAAATTACCCTGGGAAGTGACCACCAGACCTTCCTCCAAATATCCTGCTCATAGATTTCAGGGTCCTC
AACCATCTTCACGTGCTGTGAAAAAGAGTGCCCGAAGAAGACTCCAGTCCAGGCATGCTCCTAGGCCATTCAGACAGCTC
CAAAGGTCTTCTATCTTCTGCACCAACCCAAAATCTCCTGTTCTGGCAGACCAAACAGAAGTCATGCTGCTCCAGCCACC
TGAGACACCCCAAAGCCCAGTGAGCCCAGTGGCCAAAACTCTACCCAAGCCCACCCCCCTGTTACAATCCCTGTCCCCAT
CTGTAGTCCCCAACTCCAACAACCTTTGGAAGGTTGGAACCCCCAAAGCCATGAACGCTCCAGTGGCTGAGATGCCGGAT
CCACCTGTTAATCCCTCACTGGTAAAGTGCGGTCGTAAGCGGAGTCTTGAGGTCTCTGATAAGGACAGGAGGAAGATGTG
CAAACGGGGCAGGTTTGCCCAGAAAAAAGAAAAGATTCAAGCGAATGAGCTCTCAGACAGTGCCGAGGAGGAGAGTTCAG
CTGACCTCAAGACGGCTCAGAAAGATAAAGGGCTGTACGTGGAGGTACGTGTGAAAGGAGAGTGCTACAAGGGCCACGTC
ACAGCTGTGGAGGTGGGTGATAATGTGGTATGGTGGAAGGTCAAGTTTGAGGATGTGCCCAAGGATAGCACACCAAGAGA
CTGCTGGGTGGAAAAAGGCAGTGAAAATGTATGGCTAATGAAGCCATCTCCAGAGTATCAGAGTACTGACGAACAGCAAG
AGGATATAAGTAGGGAAGAGAACACTGTGGTCCAGCAGGCTTTGGCACTGCAGAGGGCCTCCATCTCTGAATGCTTCTGC
ACAGAACCTGACACTACTGCCCCAACGGCCAACCACAAGACCATTGACCTCCTGGTCCAAATTCTCTGGAATTGCTTGCG
TTATTTCATGCCCCTGAGTTTCCCCATATCCAAGAAGGAGCTAGGTGCTATGAATTCAGAAGAATTACTCTCTCTCCCTC
TGAAAGAGTGCTTCAAGCAATATGAAGTCGGACTCCAGAACCTCTGCCACTCCTACGAAAGCTGTGCCGACTCACAAGCC
AAGGCCTCTGAGGAAAGCCTGCGCATCTCCCAGAAAAAACTCCAGGAAACAGAGGAGAAACTCCAGAAGCTGCGGACCAA
TATTCGGGCACTCTTGCAAAAGGCTCAGGAGGACATAAACATCAGCGCAGATGACGAGCTGGATGCCTACATTGAGAATC
TGGTCAGCGGTGATGACTGA

ORF - retro_rnor_412 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 74.97 %
Parental protein coverage: 74.01 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalERREDLRGGFMLCFLDDGAGMDPSDAASVIQFGKSAKRTPESTQIGQYGNGLKSGSMRIGKDFILFTKKE
ERREDL.GGFMLCFLD.GAGMDP.DA.SVIQFGKSAKRTPESTQIG.YGNGLKSGSMRIGKDFILFTKKE
RetrocopyERREDLQGGFMLCFLDNGAGMDPNDAISVIQFGKSAKRTPESTQIGRYGNGLKSGSMRIGKDFILFTKKE
ParentalDTMTCLFLSRTFHEEEGIDEVIVPLPTWNARTREPITDNVEKFAIETELVYKYSPFHTEEQVMNQFMKIP
DTM.CLFLSRTFHEEEGIDEVIVPLPTW.A.TREP.TDNVEKFAIETEL.YKYSPFHTEE.VMNQF.KI.
RetrocopyDTMSCLFLSRTFHEEEGIDEVIVPLPTWSAHTREPVTDNVEKFAIETELIYKYSPFHTEEEVMNQFTKIS
ParentalGNSGTLVIIFNLKLMDNGEPELDIISNPKDIQMAETSPEGTKPERRSFRAYAAVLYIDPRMRIFIHGHKV
G.SGTLVIIFNLKLMDNGEPELDI.SNPKDI.MAE.S.EGTKPER.SF.AYAAVLYIDPRMRIFI.GHKV
RetrocopyGTSGTLVIIFNLKLMDNGEPELDITSNPKDIRMAEISQEGTKPERHSFCAYAAVLYIDPRMRIFIQGHKV
ParentalQTKRLSCCLYKPRMYKYTSSRFKTRAEQEVKKAEHVARIAEEKAREAESKARTLEVRMGGDLTRDSRVML
QTK.LSCCLYKPR.Y..TSSRFKTRAEQEVKKA..VAR.AEEKAREAESK..TLEV..GGD.TRDSR.ML
RetrocopyQTKKLSCCLYKPRKYTFTSSRFKTRAEQEVKKADQVARLAEEKAREAESKSHTLEVHIGGDITRDSRAML
ParentalRQVQNAAITLRREADVKKRIKDAKQRALKEPKELNFVFGVNIEHRDLDGMFIYNCSRLIKMYEKVGPQLE
RQVQN.AITLRREADVKKRI.DAK.RALKEPKELNFVFGVNIE.RD.DGMFIYNCSRLIKMYEKVGPQLE
RetrocopyRQVQNTAITLRREADVKKRIRDAKERALKEPKELNFVFGVNIERRDHDGMFIYNCSRLIKMYEKVGPQLE
ParentalGGMACGGVVGVVDVPYLVLEPTHNKQDFADAKEYRHLLRAMGEHLAQYWKDIAIAQRGIIKFWDEFGYLS
.GMACGGVVGV.DVPYLVLEPTH.KQDFADAKEYR.LLRAMGEHLAQYWKDIAI.Q.GIIKFWDEFGYLS
RetrocopyKGMACGGVVGVIDVPYLVLEPTHSKQDFADAKEYRLLLRAMGEHLAQYWKDIAITQYGIIKFWDEFGYLS
ParentalANWNQPPSSELRFKRRRAMEIPTTIQCDLCLKWRTLPFQLSSVEKDYPDTWVCSMNPDPEQDRCEASEQK
ANWN.PPS.EL.FKR.RAM..PTTIQCDLCLKWRTLPFQLS.VE..YPD.WVCSMNPDPEQD.CEA.EQ.
RetrocopyANWNRPPSEELHFKRKRAMQVPTTIQCDLCLKWRTLPFQLSAVEEGYPDNWVCSMNPDPEQDQCEAFEQT
ParentalQKVPLGTLKKDPKSQEEKQKQLTEKIRQQQEKLEALQKTTPIRSQADLKKLPLEVTTRPSTEEPVRRPQR
QK.PLGTLKK.PK.QEE.QKQLTEKIRQ.Q.KL.AL.K..PI.SQ.DLKKLP.EVTTRPS...P..R.Q.
RetrocopyQKIPLGTLKKVPKTQEERQKQLTEKIRQHQRKLKALKKIKPIHSQSDLKKLPWEVTTRPSSKYPAHRFQG
ParentalPRSPPLPAVIKNAPSRPPSIQTPRPATQLRKTSVI-SSPKPPATAARGETSTSRILQPAEAPRKPANLPI
P..P...AV.K.A..R..S...PRP..QL...S.....PK.P..A...E......LQP.E.P..P.....
RetrocopyPQ-PSSRAVKKSARRRLQSRHAPRPFRQLQRSSIFCTNPKSPVLADQTEV---MLLQPPETPQSPVSPVA
ParentalKTVPRPTPTVQTPSPSLIPNSKNLREVPAQKAIKTPMVKKPEPPAKQSMASSGRKRSLVVSDEEEAEEEA
KT.P.PTP..Q..SPS..PNS.NL..V...KA...P....P.PP...S....GRKRSL.VSD........
RetrocopyKTLPKPTPLLQSLSPSVVPNSNNLWKVGTPKAMNAPVAEMPDPPVNPSLVKCGRKRSLEVSDKDR-RKMC
ParentalEKRKERCKRGKLAVKEEKKEANELSDS
.......K..K....E....A.E.S..
RetrocopyKRGRFAQKKEKIQANELSDSAEEESSA

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP017611_brain 0 .00 RPM 40 .33 RPM
SRP017611_kidney 0 .00 RPM 31 .33 RPM
SRP017611_liver 0 .00 RPM 10 .09 RPM

ChIP-Seq - click to see more details

Rattus norvegicus was not studied using ChIP-Seq data.

EST - click to see more details

No EST(s) were mapped for retro_rnor_412 retrocopy.

TSS - click to see more details

Rattus norvegicus was not studied using FANTOM5 data.

Lab - click to see more details

retro_rnor_412 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_rnor_412 has 0 orthologous retrocopies within eutheria group .

Parental genes homology:
Parental genes homology involve 5 parental genes, and 6 retrocopies.

Species Parental gene accession Retrocopies number
Cavia porcellus ENSCPOG000000064421 retrocopy
retro_cpor_17,
Monodelphis domestica ENSMODG000000095571 retrocopy
retro_mdom_1757,
Mus musculus ENSMUSG000000345431 retrocopy
retro_mmus_49,
Otolemur garnettii ENSOGAG000000099712 retrocopies
retro_ogar_2044, retro_ogar_282,
Rattus norvegicus ENSRNOG00000019624 1 retrocopy
retro_rnor_412 ,


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