RetrogeneDB ID: retro_ogar_282

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873562.1:2968977..2972064(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSOGAG00000025883
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: MORC2
• Ensembl ID: ENSOGAG00000009971
• Aliases: None
• Description: MORC family CW-type zinc finger 2 [Source:HGNC Symbol;Acc:23573]

Sequence

>retro_ogar_282
ATGGCTTTCACAAATTACAGCAGTCTGCATCGAGCTCAACTAACCTTCGAATACCTGCACACAAATTCAACCACTCATGA
ATTCTTATTTGGTGCTCTTGCCGAACTGGTTGATAACGCAAGAGATGCTGATGCCACCAGAATAGATATTTATGCAGAAA
GGCGAGAGGACCTTCGAGGCGGATTTATGCTCTGCTTTTTGGATGATGGAGCAGGAATGGATCCGAGTGATACTGCCAGT
GTGATCCAGTTTGGGAAGTCGGCCAAGCGAACTCCTGAGTCCACCCAGATTGGGCAGTACGGGAATGGGTTAAAATCGGG
CTCCATGCGCATTGGGAAGGATTTTATCCTCTTCACCAAGAAAGACAACACCATGACTTGCCTCTTCCTGTCTCGCACCT
TTCATGAGGAAGAGGGCATTGATGAAGTGATCGTCCCATTGCCTACCTGGAATGCTCAGACCCGGGAACCGATCACAGAC
AACATGGAGAAGTTTGCCATCGAGACAGAACTTATCTACAAGTACTCTCCCTTTCACAATGAGGAGGAAGTGATGGTCCA
GTTCATGAAGATTCCTGGGGACAGTGGAACACTGGTGATCATCTTTAATCTCAAACTCATGGACAATGGAGAGCCAGAAC
TAGACATAACCTCGGATCCAAGAGATATCCAGATGACAGAGACCTGCCCAGAGGGCACCAAGCCAGAGCGGCGCTCATTC
CGTGCCTATGCTGCTGTGCTCTATATTGATCCCCGGATGAGGATCTTCATCCACGGGCATAAGGTGCAGACCAAGAGGCT
CTCCTGCTGCCTGTACAAACCCAGGATGTACAAGTTCACGTCAAGCCGTTTCAAGACCCGTGCAGAGCAGGAGGTGCAGA
AAGCAGAGCAGGCAGCGAGGATTGCTGAAGAGAAGGCGAAGGAGGCCGAGAGCAAAGCTCGGGCACTGGAACTGCGCCTA
GGTGGAGACCTCACTCGCGACTCCAGGGTGACGTTGCGGCAGGTGCAGAACACAGCTATCACCCTGTGCAGAGAAGCTGA
TGTCAAGAGGAGGATCAAGGAGGCCAAGCGGAGGGCACTTAAAGAACCTAAGGAACTGAATTTCACTTTTGGGGTCAACA
TTGAACACCGGGGCCTTGACGGCATGTTCATCTACAACTGTAGCCGCCTGATCAAGATGTATGAGAAAGTAGGGCCACAG
CTGGAAGGGGGCATGGCCTGTGGTGGGGTGGTTGGGGTTGTCGATGTCCCCTACCTGGTCCTGGAGCCTACACACAACAA
GCAGGACTTTGCTGATGCCAAGGAGTACCGACACCTACTGCAAGCCATGGGGGAGCATCTGGTGCAGTACTGGAAGGATA
TTGCTATTGCCCAGAGGGGTATCATCAAGTTCTGGGATGAATTTGGCTACCTCTCTGCCAACTGGAACCAGCCCCCATCC
AGTGAGCTGCGTTACAAACGCCGGAGAGCTATGGAGATCCCCACCACCATCCAGTGTGATCTGTGTCTGAAGTGGAGGAC
CCTCCCCTTCCAACTGAATTCTGTGGAAAAAGATCACCCTGACACTTGGGTTTGCTCCATGAACCTTGATCCCGAGCAGG
ACCGGTGTGAGGCTTCTGAACAGAAGCAGAAGGTTCCCCTGGGAACATTAAAAAAAGACTCAAAGACACAGGAAGAGAAG
GAGAAACAGCTGACGCAGAGAATTCGCCAGCAGCAGAAGAAGCTGGAGGCCCTACAGAAAATTACACCTATCCGCTCCCA
AGCTGACCTGAAGAAATTGCCCTTGGAAGTGACCACCAGACCTTCCACTGCGGAACATGCCCGTAGACCTCAGCGTCCTC
GGTCGCCCCCTTTACCAGCTGTGCTCAGGAATGCCCTGAGCAGACCCCTCTCCCTGCAAGCTTTCAGACCAGCCAGCCAG
CCTCTAAAGGCTCATGTTATCACCTACCACCTAAAGCTCCCTGCCCTGGCAGCCCAGGAGGCCGCTGATACATCAAGACT
GCTCCAGCCATCTGAGGCACCTGAAAAGCCTGTGAACACACCAGTCGAGACTGCTCCCTGGCCTACCCTTCTCTCACCAT
CTCCACTGCCCAACTCCATGAGTAGCCAAGAGGTTCCTGCCTCTGAAGTCATAGAGACTCCAGCGGTCAAGAAGTCAGAG
TCGCCCACTAAACTCCCTCCAGCTACCCTTGGTCTAAAGAGAAGTCTTGGGGACTCGGACGAGGAAGAAGCAGAGGAAGA
GGCCGAGAGGAAGAAGGAAACGTGCAAGCGGGGCAAATTTGCCGTGAAGGAGGAAATAAAGGAGTTGGATGAGGTCTCAG
ACAGTGCTGGGGAAGAGGATTCAGCCGAGGTGGAGAGGGCTCCGCAGGATAAAGGGCTGCCCGTGGAAGTGCGTGTGAAC
GGGGCGTGGCACACGGGCCGTGTCACAGCTGTGGAGGTGGGCCAGCGTGTGGTGCGGTGGAAGGTGAAATTTGACTATGT
GCCCACCGACTCCACACCGCGAGACCGCTGGGTGGAGAAAGGCAGCGAGGATGTGCGGCTGATGAAGCCCCCTTCCCCAG
AGTATCCGAGCCCTGACACACAGCAGGAAGGTGGGGAGGAGGAGGAGACCCCGGTGGCCCAGCAGGCTGGAGCCATGGTG
GAGCCCTGCACTTCTGAGTGCATCGGCATTGAGCCCGACACCACTGCCCCCAACACCAGCGGTGAGACCATTGACCTGCT
CGTCCAGATGCTCCAGAATTGTTTACAGTTCTTCCTGCCTCCGGATTTCCCCATCTCGAAGAAGGAGGTCAGTGTTATGA
ATTCAGATGAGCTGATATCTTTTCCGCTGAAAGAGTACTTCAAGCAGTACGAAGTGGGGATGCAGAATCTCTGCCAGTCC
TACCAAAGCCGTGCCGACTCCTGGACCAAGGCTTCTGAGGAAAGCCTGCGCACCTCGGAGAGGAAGCTGCGTGAGACAGA
GGACAAGCTACAGACACTGAGGACCAACGTCGTGGCCCTCCTGCAAAAGGTGCGGGAGGATGTAGTCATCAACACAGATG
AGGAGCTGGATACCTACATCCAGGACCTCATCACCAAGGGGGACTAA

Alignment

ORF - retro_ogar_282 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 88.66 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MAFTNYSSLNRAQLTFEYLHTNSTTHEFLFGALAELVDNARDADATRIDIYAERREDLRGGFMLCFLDDG
          MAFTNYSSL.RAQLTFEYLHTNSTTHEFLFGALAELVDNARDADATRIDIYAERREDLRGGFMLCFLDDG
Retrocopy MAFTNYSSLHRAQLTFEYLHTNSTTHEFLFGALAELVDNARDADATRIDIYAERREDLRGGFMLCFLDDG

Parental  AGMDPSDAASVIQFGKSAKRTPESTQIGQYGNGLKSGSMRIGKDFILFTKKEDTMTCLFLSRTFHEEEGI
          AGMDPSD.ASVIQFGKSAKRTPESTQIGQYGNGLKSGSMRIGKDFILFTKK..TMTCLFLSRTFHEEEGI
Retrocopy AGMDPSDTASVIQFGKSAKRTPESTQIGQYGNGLKSGSMRIGKDFILFTKKDNTMTCLFLSRTFHEEEGI

Parental  DEVIVPLPTWNAQTREPVTDNVEKFAIETELIYKYSPFRNEEEVMTQFMKIPGDSGTLVIIFNLKLMDNG
          DEVIVPLPTWNAQTREP.TDN.EKFAIETELIYKYSPF.NEEEVM.QFMKIPGDSGTLVIIFNLKLMDNG
Retrocopy DEVIVPLPTWNAQTREPITDNMEKFAIETELIYKYSPFHNEEEVMVQFMKIPGDSGTLVIIFNLKLMDNG

Parental  EPELDIISNPRDIQMAETSPEGTKPERRSFRAYAAVLYIDPRMRIFIHGHKVQTKRLSCCLYKPRMYKYT
          EPELDI.S.PRDIQM.ET.PEGTKPERRSFRAYAAVLYIDPRMRIFIHGHKVQTKRLSCCLYKPRMYK.T
Retrocopy EPELDITSDPRDIQMTETCPEGTKPERRSFRAYAAVLYIDPRMRIFIHGHKVQTKRLSCCLYKPRMYKFT

Parental  SSRFKTRAEQEVKKAEHVARIAEEKAREAESKARTLELRLGGDLTRDSRVMLRQVQNTAITLRREADVKK
          SSRFKTRAEQEV.KAE..ARIAEEKA.EAESKAR.LELRLGGDLTRDSRV.LRQVQNTAITL.READVK.
Retrocopy SSRFKTRAEQEVQKAEQAARIAEEKAKEAESKARALELRLGGDLTRDSRVTLRQVQNTAITLCREADVKR

Parental  RIKEAKQRALKEPKELNFIFGVNIEHRDLDGMFIYNCSRLIKMYEKVGPQLEGGMACGGVVGVVDVPYLV
          RIKEAK.RALKEPKELNF.FGVNIEHR.LDGMFIYNCSRLIKMYEKVGPQLEGGMACGGVVGVVDVPYLV
Retrocopy RIKEAKRRALKEPKELNFTFGVNIEHRGLDGMFIYNCSRLIKMYEKVGPQLEGGMACGGVVGVVDVPYLV

Parental  LEPTHNKQDFADAKEYRHLLRAMGEHLAQYWKDIAIAQRGIIKFWDEFGYLSANWNQPPSSELRYKRRRA
          LEPTHNKQDFADAKEYRHLL.AMGEHL.QYWKDIAIAQRGIIKFWDEFGYLSANWNQPPSSELRYKRRRA
Retrocopy LEPTHNKQDFADAKEYRHLLQAMGEHLVQYWKDIAIAQRGIIKFWDEFGYLSANWNQPPSSELRYKRRRA

Parental  MEIPTTIQCDLCLKWRTLPFQLSSVEKDYPDTWVCSMNPDPEQDRCEASEQKQKVPLGTFKKDSKTQEEK
          MEIPTTIQCDLCLKWRTLPFQL.SVEKD.PDTWVCSMN.DPEQDRCEASEQKQKVPLGT.KKDSKTQEEK
Retrocopy MEIPTTIQCDLCLKWRTLPFQLNSVEKDHPDTWVCSMNLDPEQDRCEASEQKQKVPLGTLKKDSKTQEEK

Parental  QKQLTEKIRQQQEKLEALQKTTPIRSQADLKKLPLEVTTRPSTEEPARRPQRPRSPPLPAVIRNAPSRPP
          .KQLT..IRQQQ.KLEALQK.TPIRSQADLKKLPLEVTTRPST.E.ARRPQRPRSPPLPAV.RNA.SRP.
Retrocopy EKQLTQRIRQQQKKLEALQKITPIRSQADLKKLPLEVTTRPSTAEHARRPQRPRSPPLPAVLRNALSRPL

Parental  SMQTPRPASQPRKAHVISSTPKPPALAAREEAGTSRLLQPPEAPRKPVNTPVKTAPRPTLPMQPLSPSPL
          S.Q..RPASQP.KAHVI....K.PALAA.E.A.TSRLLQP.EAP.KPVNTPV.TAP.PTL....LSPSPL
Retrocopy SLQAFRPASQPLKAHVITYHLKLPALAAQEAADTSRLLQPSEAPEKPVNTPVETAPWPTL----LSPSPL

Parental  PNSKSSREVSASKVIKTPVVKKPEPPTKLPPAAPGRKRSLGVSDEEEAEEDTERRKEKYKRGKFAVKEEK
          PNS.SS.EV.AS.VI.TP.VKK.E.PTKLPPA..G.KRSLG.SDEEEAEE..ER.KE..KRGKFAVKEE.
Retrocopy PNSMSSQEVPASEVIETPAVKKSESPTKLPPATLGLKRSLGDSDEEEAEEEAERKKETCKRGKFAVKEEI

Parental  KDLNELSDSAGEEDSAELKMAQKDKGLHVEVRVNREWYTGRVTAVEVGKNVVRWKVKFDYVPTDTTPRDR
          K.L.E.SDSAGEEDSAE...A..DKGL.VEVRVN..W.TGRVTAVEVG..VVRWKVKFDYVPTD.TPRDR
Retrocopy KELDEVSDSAGEEDSAEVERAPQDKGLPVEVRVNGAWHTGRVTAVEVGQRVVRWKVKFDYVPTDSTPRDR

Parental  WVEKGSEDVRLMKPPSPEYQSPDTQQEGGEEEETRMAQQAVAMVEPCTSECIGIEPDTTAPNTSHETIDL
          WVEKGSEDVRLMKPPSPEY.SPDTQQEGGEEEET..AQQA.AMVEPCTSECIGIEPDTTAPNTS.ETIDL
Retrocopy WVEKGSEDVRLMKPPSPEYPSPDTQQEGGEEEETPVAQQAGAMVEPCTSECIGIEPDTTAPNTSGETIDL

Parental  LVQILRNCLRYFLPPSFPISKKELSVMNSDELISFPLKEYFKQYEVGLQNLCHSYQSRADSRAKASEESL
          LVQ.L.NCL..FLPP.FPISKKE.SVMNSDELISFPLKEYFKQYEVG.QNLC.SYQSRADS..KASEESL
Retrocopy LVQMLQNCLQFFLPPDFPISKKEVSVMNSDELISFPLKEYFKQYEVGMQNLCQSYQSRADSWTKASEESL

Parental  RTSERKLRETEEKLQRLRTNIVALLQKVQEDIDINTDDELDAYIEDLITKGD
          RTSERKLRETE.KLQ.LRTN.VALLQKV.ED..INTD.ELD.YI.DLITKGD
Retrocopy RTSERKLRETEDKLQTLRTNVVALLQKVREDVVINTDEELDTYIQDLITKGD

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_282 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Cavia porcellus	ENSCPOG00000006442	1 retrocopy	retro_cpor_17,
Monodelphis domestica	ENSMODG00000009557	1 retrocopy	retro_mdom_1757,
Mus musculus	ENSMUSG00000034543	1 retrocopy	retro_mmus_49,
Otolemur garnettii	ENSOGAG00000009971	2 retrocopies	retro_ogar_2044, retro_ogar_282 ,
Rattus norvegicus	ENSRNOG00000019624	1 retrocopy	retro_rnor_412,