RetrogeneDB ID: retro_mputfur_1191

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897039.1:3671616..3672051(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: STMN1
• Ensembl ID: ENSMPUG00000015774
• Aliases: None
• Description: stathmin 1 [Source:HGNC Symbol;Acc:6510]

Sequence

>retro_mputfur_1191
GTGGCTGCTTCTGATACCCCAGGGAAAAAACTGGAGAAACATGACTCAGGCCAAGCTTTTGGGTTGATTCTCAGCCCTCA
ACCAAAAGAACTCATCCCAGAATTCCCCCTTTCCCCTCCAAGGAAAAAGGATCTTTCTCTAGAGGAAATTTGGAAGAAAT
CAAAAGCTGCAGAAGAAAAAAACAAGTCCCATAAAGCGGAGGTCTTGAAGCAGCTTGCTGAGAAATGACAGCATGAGAAA
GAAGTGCTTCAAAAAGCAACAGAAGAAAAGAACAACTTCAGTAGAATGGCAGAAGAAAAACTGACTCACAAAATGAAGGC
CAACAAAGAGAATCAGGAGGCATAAATGGCTGCCAAACTGGAGCGCTTCTGAGAGAAGGACAAGTACATGGAAGAAGTGT
GGGCAAACAAAGAATCCAAAGATCCTATTGATAAA

Alignment

ORF - retro_mputfur_1191 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 75.17 %
• Parental protein coverage: 97.32 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MASSDIQVKELEKRASGQAFELILSPRSKESVPEFPLSPPKKKDLSLEEIQKKLEAAEERRKSHEAEVLK
          .A.SD...K.LEK..SGQAF.LILSP..KE..PEFPLSPP.KKDLSLEEI.KK..AAEE..KSH.AEVLK
Retrocopy VAASDTPGKKLEKHDSGQAFGLILSPQPKELIPEFPLSPPRKKDLSLEEIWKKSKAAEEKNKSHKAEVLK

Parental  QLAEKREHEKEVLQKAIEENNNFSKMAEEKLTHKMEANKENREAQMAAKLERLREKDKHIEEVRKNKESK
          QLAEK..HEKEVLQKA.EE.NNFS.MAEEKLTHKM.ANKEN.EA.MAAKLER..EKDK..EEV..NKESK
Retrocopy QLAEK*QHEKEVLQKATEEKNNFSRMAEEKLTHKMKANKENQEA*MAAKLERF*EKDKYMEEVWANKESK

Parental  DPADE
          DP.D.
Retrocopy DPIDK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1191 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1191 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 9 parental genes, and 14 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000013761	1 retrocopy	retro_btau_247,
Callithrix jacchus	ENSCJAG00000009462	2 retrocopies	retro_cjac_3206, retro_cjac_474,
Equus caballus	ENSECAG00000021662	1 retrocopy	retro_ecab_490,
Loxodonta africana	ENSLAFG00000006089	1 retrocopy	retro_lafr_84,
Mustela putorius furo	ENSMPUG00000001863	1 retrocopy	retro_mputfur_68,
Mustela putorius furo	ENSMPUG00000015774	1 retrocopy	retro_mputfur_1191 ,
Oryctolagus cuniculus	ENSOCUG00000006493	1 retrocopy	retro_ocun_56,
Rattus norvegicus	ENSRNOG00000016810	4 retrocopies	retro_rnor_1604, retro_rnor_1855, retro_rnor_2048, retro_rnor_765,
Sorex araneus	ENSSARG00000011057	2 retrocopies	retro_sara_271, retro_sara_764,