RetrogeneDB ID: retro_mputfur_1275

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897065.1:2673432..2674255(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ACTR3
• Ensembl ID: ENSMPUG00000010717
• Aliases: None
• Description: ARP3 actin-related protein 3 homolog (yeast) [Source:HGNC Symbol;Acc:170]

Sequence

>retro_mputfur_1275
AAAGGCAATGTGAACCTGGATTTCTTTATTGGGCATGAAGTAATAGGAAAAGCAACACGTAGCATGAAGTGGCCAACTCA
GTATGGTATAGTTGAAGACTGCCACTTGATGGAAAGGTCTATGGAACAAGTGTTCTTTAAATACGTAAAGCAGAATTTGA
AAGTCATTGCTTTCTGCTGATTAAACCTCCACTAAATGCTCCCGAAAACAGAATATATTGTTAAAATAACATTCAAGCCC
TACAAAACTTCAGGCTTATACAAAGCCATGCCGGCTGCTCTTGCATAGGCAGCATCCCGAGCATCAAAACAAGTAAGAAA
ATTGATAGTGACTGGTGTGGTGACCAGATAGTGAAGATGGTACCACTCCTGTCCTTCCTGGAACTGAGGGACCTGTGATC
TGCAGCTGTGGAGGGCACATTCCAATCACAGGGCAAGTTATAACATATTTCATTCAGCAACTGCTGAGAGGCTGAGAAGT
AGGAATTCCTCTAGAGCAATCCCTGGAAACAGCTATGGAAGTAAAGGAGGGCTGTAATTATGTCTGCCCTGATTTAGGAA
AAGAATCAGCAAGTATGACACAGGAGAGCCAAGTGGATTAAACAGTCTACTGGAATCAAGGCAATCTCAAAGAAAGAATT
TTCCACTGACGTTGGTTATGATGGATCCTTGGGACCTGCATTCTTTTTCATCCAGAATTTGCTAATCCCGACTTCACACA
ACCTACCCAAAAAGTACTGGATGAAGCAATTCAGAATTATCTGATTGGTATCAGGGTTCTCTCCACAATAATACTGATGT
CCCTGAACTGGATGTGGAAGGAC

Alignment

ORF - retro_mputfur_1275 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 58.8 %
• Parental protein coverage: 66.51 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 6

Retrocopy - Parental Gene Alignment:

Parental  KGVDDLDFFIGDEAIEKPTYATKWPIRHGIVEDWDLMERFMEQVIFKYLR-AEPEDHYFLLTEPPLNT-P
          KG...LDFFIG.E.I.K.T...KWP...GIVED..LMER.MEQV.FKY...AE.E.H.FLL..PPLN..P
Retrocopy KGNVNLDFFIGHEVIGKATRSMKWPTQYGIVEDCHLMERSMEQVFFKYVK<AEFESHCFLLIKPPLNA>P

Parental  ENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERTLTGTVI-DSGDGVTHVIPVAEGYVIGSC
          ...EY...I.F......GLY.A..A.LA.AAS..S.QV.....TG.V..DS.DG.T.V.P..EG.VI.SC
Retrocopy KT-EYIVKITFKPYKTSGLYKAMPAALA*AASRASKQVRKLIVTGVVT>DSEDGTTPVLPGTEGPVICSC

Parental  IKHIPIAGRDITYFIQQLLRDREVGIPPEQSLETAKAVKERYSYVCPDLVKE-FNKYDTD-GSKWIKQYT
          ..HIPI.G..ITYFIQQLLR..EVGIP.EQSLETA..VKE...YVCPDL.KE...KYDT....KWIKQ.T
Retrocopy GGHIPITGQVITYFIQQLLRG*EVGIPLEQSLETAMEVKEGCNYVCPDLGKE<ISKYDTG<RAKWIKQST

Parental  GINAISKKEFSIDVGYERFLGPEIF-FHPEFANPDFTQPISEVVDEVIQNCPIDVRRPLYKNIVLSGGST
          GI.AISKKEFS.DVGY...LGP..F.FHPEFANPDFTQP...V.DE.IQN..I..R......I.L.....
Retrocopy GIKAISKKEFSTDVGYDGSLGPAFF<FHPEFANPDFTQPTQKVLDEAIQNYLIGIR--VLSTIILMSLNW

Parental  MFRD
          M..D
Retrocopy MWKD

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1275 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1275 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 10 parental genes, and 16 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000003401	1 retrocopy	retro_btau_672,
Callithrix jacchus	ENSCJAG00000014091	4 retrocopies	retro_cjac_3602, retro_cjac_3813, retro_cjac_385, retro_cjac_4005,
Homo sapiens	ENSG00000115091	2 retrocopies	retro_hsap_1391, retro_hsap_4694,
Gorilla gorilla	ENSGGOG00000011346	1 retrocopy	retro_ggor_2921,
Mustela putorius furo	ENSMPUG00000010717	1 retrocopy	retro_mputfur_1275 ,
Mus musculus	ENSMUSG00000026341	1 retrocopy	retro_mmus_3653,
Nomascus leucogenys	ENSNLEG00000011619	2 retrocopies	retro_nleu_1077, retro_nleu_2364,
Pongo abelii	ENSPPYG00000012798	1 retrocopy	retro_pabe_3647,
Pan troglodytes	ENSPTRG00000012388	2 retrocopies	retro_ptro_3118, retro_ptro_955,
Vicugna pacos	ENSVPAG00000009479	1 retrocopy	retro_vpac_468,