RetrogeneDB ID: retro_mputfur_1352

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897093.1:2748487..2748882(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: NT5C
• Ensembl ID: ENSMPUG00000013985
• Aliases: None
• Description: 5', 3'-nucleotidase, cytosolic [Source:HGNC Symbol;Acc:17144]

Sequence

>retro_mputfur_1352
GAAACCCAAGGCTTTTTCCTAGACTTGGAGCCAATCTCTGAAGCCTTGGAAACCATGCAGGAGATGAACATGCTGGACAC
TGAAGCCTTCATCTGCAACAGCCCTCTGATAAAGTATGAATTGGGTGAGAAGTACCACTGGGTGGACAATCAGCTGGGGC
CTCAGTCTGAGAGTGAGATAGCCTGATGAGGGACAAGAGCATAGTCTTCGTGGACCTGATTGTTGGTAACAAAGACATCA
TTCAAAACCAAGAGTGACACATGTCTAAGACCCCAGTCTGGAAGCACATCTTGTTCACCTGCTGCCATACCAGGATCTGG
CCCTACCCCCTCACAAGGAGACAGTTGCTCTGCTGGAGTAACAGTTGGAGGCAGATCATAGACAGCAAGCAAGGG

Alignment

ORF - retro_mputfur_1352 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 60.14 %
• Parental protein coverage: 62.09 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  EAPGFFLDLEPIPGAVEAMREMNNMQDTEVFICSSPLLKYEHCVGEKYRWVEKHLGPQFVERII-LTRDK
          E..GFFLDLEPI..A.E.M.EMN.M.DTE.FIC.SPL.KYE...GEKY.WV...LGPQ....I..L.RDK
Retrocopy ETQGFFLDLEPISEALETMQEMN-MLDTEAFICNSPLIKYE--LGEKYHWVDNQLGPQSESEIA<LMRDK

Parental  TVVLGDLLIDDKDSIQGQE----QTPSWEHILFTCCHN-QHLALPP-SRRRLLSWSDNWREIIESKRG
          ..V..DL....KD.IQ.QE.....TP.W.HILFTCCH..Q.LALPP..RR.LL.WS..WR.II.SK.G
Retrocopy SIVFVDLIVGNKDIIQNQE*HMSKTPVWKHILFTCCHT<QDLALPP>TRRQLLCWSNSWRQIIDSKQG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1352 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1352 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 9 parental genes, and 13 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000009175	1 retrocopy	retro_amel_1684,
Callithrix jacchus	ENSCJAG00000014578	1 retrocopy	retro_cjac_810,
Felis catus	ENSFCAG00000031408	2 retrocopies	retro_fcat_1016, retro_fcat_606,
Homo sapiens	ENSG00000125458	2 retrocopies	retro_hsap_1441, retro_hsap_1442,
Gorilla gorilla	ENSGGOG00000004740	2 retrocopies	retro_ggor_1061, retro_ggor_1109,
Microcebus murinus	ENSMICG00000017488	1 retrocopy	retro_mmur_1088,
Mustela putorius furo	ENSMPUG00000013985	1 retrocopy	retro_mputfur_1352 ,
Nomascus leucogenys	ENSNLEG00000000601	2 retrocopies	retro_nleu_1083, retro_nleu_1416,
Pongo abelii	ENSPPYG00000008619	1 retrocopy	retro_pabe_1195,