RetrogeneDB ID: retro_mputfur_1649

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897942.1:4458..4707(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: Fkbp1a
• Ensembl ID: ENSMPUG00000017946
• Aliases: None
• Description: FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]

Sequence

>retro_mputfur_1649
ATGGGAGTGCAAGGGAGACCATCTCCCTGGAGTTGGATTCACTTTCCCCGAGTGTGATCAAACCTACATGGTGCACTATC
TGGGGATACTTGAAGATGGAAAGAAACTTGATTATCTCAGGGACAGAAACAAGCTCTTTAGGTTTATCTTAGGCAGCAAG
AGGTTACCTGAGGCTTAGAAGAAGGGGTTGCCCACAAGAATATGGATCAGAGAGCCAAACTGACTATCTCTCCAGACTAC
ATTTCTGGT

Alignment

ORF - retro_mputfur_1649 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 65.52 %
• Parental protein coverage: 77.78 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  MGVQV-ETIS-PGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLG-KQEVIRGWEEGVAQM
          MGVQ..ETIS.PG.G.TFP...QT..VHY.G.LEDGKK.D..RDRNK.F.F.LG..QEV..G.EEGVA..
Retrocopy MGVQG<ETIS<PGVGFTFPECDQTYMVHYLGILEDGKKLDYLRDRNKLFRFILG<QQEVT*GLEEGVAHK

Parental  SVGQRAKLTISPDYAYG
          ...QRAKLTISPDY..G
Retrocopy NMDQRAKLTISPDYISG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1649 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1649 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 13 parental genes, and 22 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000008303	4 retrocopies	retro_btau_1220, retro_btau_1265, retro_btau_128, retro_btau_1760,
Ciona savignyi	ENSCSAVG00000006859	1 retrocopy	retro_csav_11,
Echinops telfairi	ENSETEG00000007454	1 retrocopy	retro_etel_2059,
Felis catus	ENSFCAG00000026097	2 retrocopies	retro_fcat_168, retro_fcat_751,
Homo sapiens	ENSG00000088832	1 retrocopy	retro_hsap_1198,
Gorilla gorilla	ENSGGOG00000001729	3 retrocopies	retro_ggor_1494, retro_ggor_2344, retro_ggor_933,
Macaca mulatta	ENSMMUG00000015996	1 retrocopy	retro_mmul_10,
Monodelphis domestica	ENSMODG00000019554	2 retrocopies	retro_mdom_151, retro_mdom_733,
Mustela putorius furo	ENSMPUG00000017946	1 retrocopy	retro_mputfur_1649 ,
Pteropus vampyrus	ENSPVAG00000013840	1 retrocopy	retro_pvam_1367,
Sus scrofa	ENSSSCG00000007188	1 retrocopy	retro_sscr_98,
Tursiops truncatus	ENSTTRG00000003547	3 retrocopies	retro_ttru_1227, retro_ttru_802, retro_ttru_904,
Vicugna pacos	ENSVPAG00000011511	1 retrocopy	retro_vpac_171,