RetrogeneDB ID: retro_mputfur_464

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896911.1:7207066..7207478(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMPUG00000012532
• Aliases: None
• Description: None

Sequence

>retro_mputfur_464
ATGCCCTCTAGACTGAGGATGACCTGGGAATTTTGGGGTCACGTGAGCCATGGCCAAGGCCACTTAGGCAAGAAAGAAGC
ACCCCAGAGGCCAGGGTAATGCTGGTGGCATGCATCACCACAGGATCAACTTTGACAAAGATCACTCAGGTGACTTTGGA
AAAACTGGTATGAGCCATTAACACTTAAAGAGGAACCAGAGCTTCTGCCCAACTGTCAACCTTGTTATACTGTAGTCCCT
TGTCAGTCAGTGAGCAGACCCAGGGACATGCTGCCCAAAACAGGACTGGAGCTGCTCCTGTCATTGATGGGGTGTGATGG
GGTACTACAGAGTTCTGGGAGAGGGAATTCTCCCCAAACAATCTGGCATTATGAAGGCCAGATTCTTCAGTAGAAGAGCT
GAGGAGAGGATT

Alignment

ORF - retro_mputfur_464 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 58.45 %
• Parental protein coverage: 96.48 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 4

Retrocopy - Parental Gene Alignment:

Parental  MPSRLRKTRKLRGHVSHGHGRIGK-HRKHPGGR-GNAGGMHHHRINFDKYHPGYFGKVGMRHYHLKRNQS
          MPSRLR.T....GHVSHG.G..GK..R..P..R.GNAGGMHHHRINFDK.H.G.FGK.GM.H.HLKRNQS
Retrocopy MPSRLRMTWEFWGHVSHGQGHLGK<ERSTPEAR<GNAGGMHHHRINFDKDHSGDFGKTGMSH*HLKRNQS

Parental  FCPTVNLDKLWTLVSE-QTRVNAAKNKTGAAPIIDVVR-SGYYKVLGKGK-LPKQPVIVKAKFFSRRAEE
          FCPTVNL..L..LVS....R......KTG...........G.....G.G..LPKQ..I.KA.FFSRRAEE
Retrocopy FCPTVNLVIL*SLVSQ<VSRPRDMLPKTGLELLLSLMGCDGVLQSSGRGN>LPKQSGIMKARFFSRRAEE

Parental  KI
          .I
Retrocopy RI

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_464 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_464 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 13 parental genes, and 65 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000004205	15 retrocopies	retro_amel_1095, retro_amel_1160, retro_amel_1165, retro_amel_130, retro_amel_1311, retro_amel_1441, retro_amel_1673, retro_amel_393, retro_amel_450, retro_amel_497, retro_amel_521, retro_amel_693, retro_amel_752, retro_amel_966, retro_amel_989,
Bos taurus	ENSBTAG00000005349	2 retrocopies	retro_btau_126, retro_btau_45,
Canis familiaris	ENSCAFG00000006936	2 retrocopies	retro_cfam_145, retro_cfam_384,
Callithrix jacchus	ENSCJAG00000011775	1 retrocopy	retro_cjac_211,
Ficedula albicollis	ENSFALG00000000924	1 retrocopy	retro_falb_20,
Myotis lucifugus	ENSMLUG00000016616	7 retrocopies	retro_mluc_113, retro_mluc_1253, retro_mluc_164, retro_mluc_2123, retro_mluc_2202, retro_mluc_47, retro_mluc_572,
Monodelphis domestica	ENSMODG00000007480	1 retrocopy	retro_mdom_575,
Mustela putorius furo	ENSMPUG00000012532	3 retrocopies	retro_mputfur_118, retro_mputfur_1362, retro_mputfur_464 ,
Mus musculus	ENSMUSG00000046364	1 retrocopy	retro_mmus_40,
Oryctolagus cuniculus	ENSOCUG00000005442	1 retrocopy	retro_ocun_12,
Rattus norvegicus	ENSRNOG00000014214	10 retrocopies	retro_rnor_132, retro_rnor_193, retro_rnor_1996, retro_rnor_2466, retro_rnor_253, retro_rnor_261, retro_rnor_334, retro_rnor_370, retro_rnor_565, retro_rnor_606,
Tupaia belangeri	ENSTBEG00000000046	20 retrocopies	retro_tbel_1093, retro_tbel_1101, retro_tbel_1148, retro_tbel_1152, retro_tbel_1223, retro_tbel_1338, retro_tbel_1639, retro_tbel_2017, retro_tbel_2606, retro_tbel_2777, retro_tbel_298, retro_tbel_3111, retro_tbel_3496, retro_tbel_3881, retro_tbel_4566, retro_tbel_460, retro_tbel_544, retro_tbel_643, retro_tbel_925, retro_tbel_937,
Taeniopygia guttata	ENSTGUG00000008355	1 retrocopy	retro_tgut_18,