RetrogeneDB ID: retro_mputfur_586

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896923.1:2262339..2262639(-)
• Located in intron of: ENSMPUG00000016821

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMPUG00000008935
• Aliases: None
• Description: Transmembrane protein 14A [Source:UniProtKB/TrEMBL;Acc:G9KTV8]

Sequence

>retro_mputfur_586
CTGCCAATGGACCTGATCGGTTTTGGTTATGCGGCCCTCGTGACGTTTGGTAGCATCTTGGGATATAAGCGGAGACGTGG
TATTCCATCTTTGATCGCTGGTCTTTTTGTTGGATTTTTGGCTGGCTAGGGAGCCTACCGTGTCTCCAGTGACAAGTGAG
ATGTCAAGCTGTCACTGTTTACAGCTTTCTTCCTGGCCACCATAATGGGTGTGAGGTATAAGAGATCTAAGAAGATTGTG
CCAGCTGGGCTGGTTGCAGGTTTAAGCCTCATGATGATTCCGAGACTTATCTTATTGCTG

Alignment

ORF - retro_mputfur_586 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 93.0 %
• Parental protein coverage: 80.65 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  LPMDLIGFGYAALVTFGSILGYKRRGGVPSLIAGLFVGFLAGYGAYRVSNDKRDVKLSLFTAFFLATIMG
          LPMDLIGFGYAALVTFGSILGYKRR.G.PSLIAGLFVGFLAG.GAYRVS.DK.DVKLSLFTAFFLATIMG
Retrocopy LPMDLIGFGYAALVTFGSILGYKRRRGIPSLIAGLFVGFLAG*GAYRVSSDK*DVKLSLFTAFFLATIMG

Parental  VRYKRSKKIMPAGLVAGLSLMMILRLILLL
          VRYKRSKKI.PAGLVAGLSLMMI.RLILLL
Retrocopy VRYKRSKKIVPAGLVAGLSLMMIPRLILLL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_586 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_586 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 10 parental genes, and 12 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000005206	1 retrocopy	retro_btau_505,
Latimeria chalumnae	ENSLACG00000012581	1 retrocopy	retro_lcha_64,
Microcebus murinus	ENSMICG00000016339	1 retrocopy	retro_mmur_211,
Mustela putorius furo	ENSMPUG00000000613	2 retrocopies	retro_mputfur_1322, retro_mputfur_226,
Mustela putorius furo	ENSMPUG00000008935	2 retrocopies	retro_mputfur_157, retro_mputfur_586 ,
Sorex araneus	ENSSARG00000005516	1 retrocopy	retro_sara_307,
Tupaia belangeri	ENSTBEG00000011162	1 retrocopy	retro_tbel_1562,
Tarsius syrichta	ENSTSYG00000004269	1 retrocopy	retro_tsyr_1783,
Tursiops truncatus	ENSTTRG00000015237	1 retrocopy	retro_ttru_1442,
Vicugna pacos	ENSVPAG00000004486	1 retrocopy	retro_vpac_450,