RetrogeneDB ID: retro_mputfur_587

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896923.1:4251339..4252595(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: PRIM1
• Ensembl ID: ENSMPUG00000001603
• Aliases: None
• Description: primase, DNA, polypeptide 1 (49kDa) [Source:HGNC Symbol;Acc:9369]

Sequence

>retro_mputfur_587
ATGGAGACGTTTGACCCTGCCGAGCTGCCCAAACTGCTTAAGCTTTATTACTGGAGGCTTTTTCCCTACGCCCAGTACTA
CTGTTGGCTCAACTATGGCGGAGTAATAAAGAATTACTTTCAACACTGTGAATTTTCATTCACATTGAAAGATATTTACA
TTCGCTCCCAATCCTTCAACAACCAGAGTGAGCTGGAAAAGGAGATGCAGAAAATGAATCCATACAAGATTGATATAGGC
GCAATATATTCCCACAGACCCAATCAGCACAATACAGTGAAGCTGTGAGCTTTCCAGGCTCAAGAAAAAGAACTGGTGTT
TGACATTGATATGACAGACTATGACAATGTGAGGAGATGTTGTAGTTCTGCAGACATATGTTCTCAGTGCTGGACCCTCG
TGACGATGGCCATACACATAATCGACCGAGCACTGAAGGAGGACTTTGGATTTCAGCATCGTCTCTGGGTATATTCTGGA
AGGAGAGGTGTTCATTGTTGGGTCTGTGATGAATCGGTTAGAAAACTCTCCTCTGCAGTACATTCTGGGATAGTTGAGTA
TTTGAGTCTTGTAGAGGGTGGTCAAGATGTTAAAAAGAAAGTCCATCTAAGTGAAAAAATTCACCCTTTTGTCAGCAAAT
CTATAAACATAATAAAAAAAATACTTCCAAGAATATGCCTTAGTTGATCAAGATATTCTTGAAAATAAAGAAAGGTGGGA
TAAGATTTTAGCCCTTGTTCCTGAAACAATTCATGAGCCACTTCAGCAAAACTTCCCGAAGTATCACAATTTACTTCAGC
GTTGGGAATATTTGACGAAAGCCATCAGCTTGCAGGATAGTACCAAAAATGACAAATGTGGACCCTGGCTGGAATGGGAG
ATCATGCTCCAGTACTGTTTCCCACGGCTGGACATCAATATTAGCAAAGGAATCAATCATTTACTGAAGAGCCCCTTTAG
TGTTTCATCCTAAAACAGGTCGTATTTCTGTGCCTATTGATTTACAGAAAGTGGAACAGTTTGATCCATTTACTGTTCCA
ACCATAAGCTCTCTCTGCCGTGAATTGGATGCCATTTCCATTAATGATGAGGGAAAAGAAGGAAATGAAGCCGATTCTGA
TATCAAACGTAGAACCAGAGATTATAAGAAGACCAGTCTAGCTCCTTATATAAAAGTTTTTGAACAATTTCTTGCAAACC
TGGATAAATCCCGAAAAGGAGAACTTCTCGATAAGAGTGATTTACAGAAAGACTTC

Alignment

ORF - retro_mputfur_587 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 92.87 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 1
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  METFDPAELPELLKLYYRRLFPYAQYYRWLNYGGVIKNYFQNREFSFTLKDDIYIRYQSFNNQSELEKEM
          METFDPAELP.LLKLYY.RLFPYAQYY.WLNYGGVIKNYFQ..EFSFTLKD.IYIR.QSFNNQSELEKEM
Retrocopy METFDPAELPKLLKLYYWRLFPYAQYYCWLNYGGVIKNYFQHCEFSFTLKD-IYIRSQSFNNQSELEKEM

Parental  QKMNPYKIDIGAVYSHRPNQHNTVKLGAFQAQEKELVFDIDMTDYDDVRRCCSSADICSKCWTLMTMAIR
          QKMNPYKIDIGA.YSHRPNQHNTVKL.AFQAQEKELVFDIDMTDYD.VRRCCSSADICS.CWTL.TMAI.
Retrocopy QKMNPYKIDIGAIYSHRPNQHNTVKL*AFQAQEKELVFDIDMTDYDNVRRCCSSADICSQCWTLVTMAIH

Parental  IIDRALKEDFGFKHRLWVYSGRRGVHCWVCDESVRKLSSAVRSGIVEYLSLVKGGQDVKKKVHLSEKIHP
          IIDRALKEDFGF.HRLWVYSGRRGVHCWVCDESVRKLSSAV.SGIVEYLSLV.GGQDVKKKVHLSEKIHP
Retrocopy IIDRALKEDFGFQHRLWVYSGRRGVHCWVCDESVRKLSSAVHSGIVEYLSLVEGGQDVKKKVHLSEKIHP

Parental  FVSKSINI-IKKYFQEYALVDQDILENKESWDKILALVPETIHETLQQNFPKYHNSLQRWEYLMKAISLQ
          FVSKSINI....YFQEYALVDQDILENKE.WDKILALVPETIHE.LQQNFPKYHN.LQRWEYL.KAISLQ
Retrocopy FVSKSINI>XXXYFQEYALVDQDILENKERWDKILALVPETIHEPLQQNFPKYHNLLQRWEYLTKAISLQ

Parental  DSTKNDKCGPYLEWEIMLQYCFPRLDINVSKGINHLLKSPFSV-HPKTGRISVPIDLQKVEQFDPFTVPT
          DSTKNDKCGP.LEWEIMLQYCFPRLDIN.SKGINHLLKSPFSV.HPKTGRISVPIDLQKVEQFDPFTVPT
Retrocopy DSTKNDKCGPWLEWEIMLQYCFPRLDINISKGINHLLKSPFSV>HPKTGRISVPIDLQKVEQFDPFTVPT

Parental  ISSLCRELDAISINDEGKEGNEAESDIKRRTRDYKKTSLAPYIKVFEQFLENLDKSRKGELLKKSDLQKD
          ISSLCRELDAISINDEGKEGNEA.SDIKRRTRDYKKTSLAPYIKVFEQFL.NLDKSRKGELL.KSDLQKD
Retrocopy ISSLCRELDAISINDEGKEGNEADSDIKRRTRDYKKTSLAPYIKVFEQFLANLDKSRKGELLDKSDLQKD

Parental  F
          F
Retrocopy F

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_587 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_587 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 12 parental genes, and 13 retrocopies.

Species	Parental gene accession	Retrocopies number
Equus caballus	ENSECAG00000015297	1 retrocopy	retro_ecab_447,
Homo sapiens	ENSG00000198056	1 retrocopy	retro_hsap_339,
Mustela putorius furo	ENSMPUG00000001603	1 retrocopy	retro_mputfur_587 ,
Nomascus leucogenys	ENSNLEG00000017443	1 retrocopy	retro_nleu_1780,
Oryctolagus cuniculus	ENSOCUG00000003458	1 retrocopy	retro_ocun_1265,
Procavia capensis	ENSPCAG00000007103	1 retrocopy	retro_pcap_174,
Pongo abelii	ENSPPYG00000004672	1 retrocopy	retro_pabe_356,
Pan troglodytes	ENSPTRG00000022987	1 retrocopy	retro_ptro_271,
Pteropus vampyrus	ENSPVAG00000008017	2 retrocopies	retro_pvam_153, retro_pvam_703,
Sus scrofa	ENSSSCG00000000408	1 retrocopy	retro_sscr_499,
Tupaia belangeri	ENSTBEG00000012998	1 retrocopy	retro_tbel_2255,
Tursiops truncatus	ENSTTRG00000002153	1 retrocopy	retro_ttru_352,