RetrogeneDB ID: | retro_pcap_174 | ||
Retrocopylocation | Organism: | Hyrax (Procavia capensis) | |
Coordinates: | scaffold_13695:18807..19466(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PRIM1 | ||
Ensembl ID: | ENSPCAG00000007103 | ||
Aliases: | None | ||
Description: | primase, DNA, polypeptide 1 (49kDa) [Source:HGNC Symbol;Acc:9369] |
Percent Identity: | 75.34 % |
Parental protein coverage: | 53.37 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | LEKEMQKMNPCKIDIGAVYSHKPSQHNT-VKLGAFQAQEKELVFDIDMTDYDDVRRCCSSADTCPKCWTL |
.EKEMQKMNP.K...G..YS..PS..N..VKLG..QAQEKELVFD.D..DY...R..CSSAD...KC.TL | |
Retrocopy | MEKEMQKMNPYKTGTGVMYSCRPSLFNK<VKLGTYQAQEKELVFDNDIMDYNNTR-WCSSADIYSKCCTL |
Parental | MTMAIRIIDRALKEDFGFKHRLWVYSGRRGVHCWVCDESVRKLSSAVRSGIVEYLSLVKGGPDVKKKVHL |
MTMAI.II.R.LKEDFG.K..LWVY.GRRGVHCWVCDESVRKLSSAV.SGIVEYL.LVKGGPD.KKKV.L | |
Retrocopy | MTMAI*IINRVLKEDFGLKCCLWVYFGRRGVHCWVCDESVRKLSSAVCSGIVEYLILVKGGPDIKKKVDL |
Parental | SEKVHPFVRRSVNIITKYFEEYALVGQDILENKESWDKILALVPETMHDDLQKGFQKCQTSLQRWEYLKT |
.EK.HPFVRRS.NII.KYFE.YALVGQDILEN.ESWDK.L.LVPETMHDDLQ.GFQKC..SLQRWE..K. | |
Retrocopy | TEKIHPFVRRSINIIIKYFE*YALVGQDILEN-ESWDKNLVLVPETMHDDLQ*GFQKCHSSLQRWEHVKK |
Parental | VASKCQSNVKNDK |
VAS..QSNV.NDK | |
Retrocopy | VASRYQSNVNNDK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Equus caballus | ENSECAG00000015297 | 1 retrocopy | |
Homo sapiens | ENSG00000198056 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000001603 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000017443 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000003458 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000007103 | 1 retrocopy |
retro_pcap_174 ,
|
Pongo abelii | ENSPPYG00000004672 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000022987 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000008017 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000000408 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000012998 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000002153 | 1 retrocopy |