RetrogeneDB ID: | retro_ocun_1265 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 5:19310796..19311807(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000022105 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PRIM1 | ||
Ensembl ID: | ENSOCUG00000003458 | ||
Aliases: | None | ||
Description: | primase, DNA, polypeptide 1 (49kDa) [Source:HGNC Symbol;Acc:9369] |
Percent Identity: | 99.11 % |
Parental protein coverage: | 80.24 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | YSHRPSQHSTVKLGAFQAQEKELVFDIDMTDYDDVRRCCSSADICSKCWTLMTMAILIIDRALKEDFGFK |
YSHRPSQH.TVKLGAFQAQEKELVFDIDMTDYDDVRRCCSSADICSKCWTLMTMAILIIDRALKE.FGFK | |
Retrocopy | YSHRPSQHNTVKLGAFQAQEKELVFDIDMTDYDDVRRCCSSADICSKCWTLMTMAILIIDRALKEVFGFK |
Parental | HRLWVYSGRRGVHCWVCDESVRKLSSAVRSGIVEYLSLVKGGQDVKKKVHLNEKVHPFVRRSINIIKKYF |
HRLWVYSGRRGVHCWVCDESVRKLSS.VRSGIVEYLSLVKGGQDVKKKVHLNEKVHPFVRRSINIIKKYF | |
Retrocopy | HRLWVYSGRRGVHCWVCDESVRKLSSTVRSGIVEYLSLVKGGQDVKKKVHLNEKVHPFVRRSINIIKKYF |
Parental | EEYALVGQDILENKESWDKILALVPEAIHADLQQGFQKCHSSLQRWEHLKKTIAKHQNNTKNDKCAPWLE |
EEYALVGQDILENKESWDKILALVPEAIHADLQQGFQKCHSSLQRWEHLKKTIAKHQNNTKNDKCAPWLE | |
Retrocopy | EEYALVGQDILENKESWDKILALVPEAIHADLQQGFQKCHSSLQRWEHLKKTIAKHQNNTKNDKCAPWLE |
Parental | WEIMLQYCFPRLDINVSKGINHLLKSPFSVHPKTGRISVPINLQKVDQFDPFTVPTISSICRELDAISNN |
WEIMLQYCFPRLDINVSKGINHLLKSPFSVHPKTGRISVPINLQKVDQFDPFTVPTISSICRELDAISNN | |
Retrocopy | WEIMLQYCFPRLDINVSKGINHLLKSPFSVHPKTGRISVPINLQKVDQFDPFTVPTISSICRELDAISNN |
Parental | EEEKEENEAESDIKRRTRDYKKTSLAPYVKVFEQFLENLDKSRKGELLKKSDLQKDF |
EEEKEENEAESDIKRRTRDYKKTSLAPYVKVFEQFLENLDKSRKGELLKKSDLQKDF | |
Retrocopy | EEEKEENEAESDIKRRTRDYKKTSLAPYVKVFEQFLENLDKSRKGELLKKSDLQKDF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .11 RPM | 7 .51 RPM |
SRP017611_kidney | 0 .10 RPM | 2 .43 RPM |
SRP017611_liver | 0 .00 RPM | 0 .69 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Equus caballus | ENSECAG00000015297 | 1 retrocopy | |
Homo sapiens | ENSG00000198056 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000001603 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000017443 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000003458 | 1 retrocopy |
retro_ocun_1265 ,
|
Procavia capensis | ENSPCAG00000007103 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000004672 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000022987 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000008017 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000000408 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000012998 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000002153 | 1 retrocopy |