RetrogeneDB ID:

retro_nleu_1030

Retrocopy
location
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397279.1:15143173..15143632(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSNLEG00000017326
Aliases:None
Status:KNOWN_PSEUDOGENE
Parental gene
information
Parental gene summary:
Parental gene symbol:NME2
Ensembl ID:ENSNLEG00000007919
Aliases:None
Description:Nucleoside diphosphate kinase [Source:UniProtKB/TrEMBL;Acc:G1R8Y6]


Retrocopy-Parental alignment summary:






>retro_nleu_1030
ACCATGGCCAACCTCGAGCGCACCTTCATCGCCATCAAGCCGGACGGCGTGCAGCGCGGCCTGGTGGGCGAGATCATCAA
GCGCTTCGAGCAGAAGGGGTTCCGCCTCGTGGCCATGAAGTTCCTCCGGGCCTCTGAAGAACACCTGAAGCAGCACTACG
TTGACCTGAAAGACCGCCCATTCTTCCCTGGGCTGGTGAAGTACATGAACTCAGGGCCGGTCGTGGCCATGGTCTGGGAG
GGGCTGAACGTGGTGAAGACAGGCCGAGTGATGCTTGGGGAGACCAATCCAGCAGATTCTAAGCCAGGCACCATTCGTGG
GGACTTCTGCATTCAGGTTGGCAGGAACATCATTCATGGCAGTGATTCAGTAAAAAGTGCTGAAAAAGAAATCGGCCTAT
GGTTTAAGCCTGAAGAACTGGTTGACTACAAGTCTTGTGCTCATGACTGAGTCTATGAA

ORF - retro_nleu_1030 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 88.89 %
Parental protein coverage: 86.44 %
Number of stop codons detected: 1
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMH
TMAN.ERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLV..KF..ASE..LK.HYVDLKDRPFF.GLVKYM.
RetrocopyTMANLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYVDLKDRPFFPGLVKYMN
ParentalSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEEL
SGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSV.SAEKEIGLWF.PEEL
RetrocopySGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVKSAEKEIGLWFKPEEL
ParentalVDYTSCAQNWIYE
VDY.SCA....YE
RetrocopyVDYKSCAHD*VYE

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Nomascus leucogenys was not studied using RNA-Seq expression data.
Nomascus leucogenys was not studied using ChIP-Seq data.
Nomascus leucogenys was not studied using EST data.
Nomascus leucogenys was not studied using FANTOM5 data.
retro_nleu_1030 was not experimentally validated.

Retrocopy orthology:
Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 11 parental genes, and 26 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000046511 retrocopy
Canis familiaris ENSCAFG000000236287 retrocopies
Gorilla gorilla ENSGGOG000000165261 retrocopy
Monodelphis domestica ENSMODG000000284921 retrocopy
Mustela putorius furoENSMPUG000000155595 retrocopies
Mus musculus ENSMUSG000000912283 retrocopies
Nomascus leucogenys ENSNLEG00000007919 2 retrocopies
retro_nleu_1029, retro_nleu_1030 ,
Nomascus leucogenys ENSNLEG000000080681 retrocopy
Oryctolagus cuniculus ENSOCUG000000221351 retrocopy
Pan troglodytes ENSPTRG000000094151 retrocopy
Rattus norvegicus ENSRNOG000000026933 retrocopies



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