RetrogeneDB ID: retro_nleu_2267

Retrocopy location

• Organism: Gibbon (Nomascus leucogenys)
• Coordinates: GL397339.1:10582667..10582976(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: NAA20
• Ensembl ID: ENSNLEG00000009855
• Aliases: None
• Description: N(alpha)-acetyltransferase 20, NatB catalytic subunit [Source:HGNC Symbol;Acc:15908]

Sequence

>retro_nleu_2267
ACCAACATGGGTCCACTTACAGAAACTTTGTACTTACAGTACCTCACCCACTGGCCAGAGTATTTCATAGCTATAGAGGT
TCTTGGAGAGCTTATGGGTCACATGATGGGTAAAATAAATGTTTCTGTCATAGCTAGGGAAAAATTTCACAGGCATGTCA
CAGCCTTCCCTGTTGTCCTGGAATTTCCATGCCTTGGTTTGGCCGCTGAACTAATGGAGGAGAATTCCAAAAGAAAGGGA
GATTTTGAAATGGATCTCTTAATAAGAGCATCCAATCACGTTTCAGTGAACATGTACATACAGTTGGGC

Alignment

ORF - retro_nleu_2267 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 60.36 %
• Parental protein coverage: 57.89 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  SNLDPLTETYGIPFYLQYLAHWPEYFIVAEAPGGELMGYIMGKAEGSV-AREEWHGHVTALSVAPEFRRL
          .N..PLTET.....YLQYL.HWPEYFI..E...GELMG..MGK...SV.ARE..H.HVTA..V..EF..L
Retrocopy TNMGPLTET----LYLQYLTHWPEYFIAIEVL-GELMGHMMGKINVSVIAREKFHRHVTAFPVVLEFPCL

Parental  GLAAKLMELLEEISERKGGFFVDLFVRVSNQVAVNMYKQLG
          GLAA.LME...E.S.RKG.F..DL..R.SN.V.VNMY.QLG
Retrocopy GLAAELME---ENSKRKGDFEMDLLIRASNHVSVNMYIQLG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Nomascus leucogenys was not studied using RNA-Seq expression data.

ChIP-Seq

Nomascus leucogenys was not studied using ChIP-Seq data.

EST

Nomascus leucogenys was not studied using EST data.

TSS

Nomascus leucogenys was not studied using FANTOM5 data.

Lab

retro_nleu_2267 was not experimentally validated.

Homology

Retrocopy orthology:

Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 15 parental genes, and 21 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000001144	1 retrocopy	retro_btau_899,
Canis familiaris	ENSCAFG00000032025	1 retrocopy	retro_cfam_768,
Callithrix jacchus	ENSCJAG00000005377	4 retrocopies	retro_cjac_1099, retro_cjac_1629, retro_cjac_2984, retro_cjac_439,
Gorilla gorilla	ENSGGOG00000004247	1 retrocopy	retro_ggor_374,
Microcebus murinus	ENSMICG00000006044	1 retrocopy	retro_mmur_540,
Macaca mulatta	ENSMMUG00000007708	1 retrocopy	retro_mmul_479,
Mustela putorius furo	ENSMPUG00000001228	2 retrocopies	retro_mputfur_1495, retro_mputfur_321,
Mus musculus	ENSMUSG00000002728	3 retrocopies	retro_mmus_1228, retro_mmus_3146, retro_mmus_3257,
Nomascus leucogenys	ENSNLEG00000009855	1 retrocopy	retro_nleu_2267 ,
Oryctolagus cuniculus	ENSOCUG00000015481	1 retrocopy	retro_ocun_1331,
Otolemur garnettii	ENSOGAG00000011542	1 retrocopy	retro_ogar_2007,
Pongo abelii	ENSPPYG00000010746	1 retrocopy	retro_pabe_342,
Pan troglodytes	ENSPTRG00000013299	1 retrocopy	retro_ptro_284,
Ictidomys tridecemlineatus	ENSSTOG00000014733	1 retrocopy	retro_itri_1656,
Tupaia belangeri	ENSTBEG00000000969	1 retrocopy	retro_tbel_567,