RetrogeneDB ID: | retro_nleu_960 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397277.1:7644083..7644401(-) | ||
Located in intron of: | ENSNLEG00000011211 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LSM2 | ||
Ensembl ID: | ENSNLEG00000006371 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 84.91 % |
Parental protein coverage: | 60.23 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | PVRPAARGASTMLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKN |
P...AARG.STMLF.SFF.SLVGK.VVVELKNDLSICGTLHSVDQYLNIK.T.ISVTDPEKYP..LSVKN | |
Retrocopy | PLSGAARGTSTMLFCSFFRSLVGKHVVVELKNDLSICGTLHSVDQYLNIKPTNISVTDPEKYPRRLSVKN |
Parental | CFIRGSVVRYVQLPADEVDTQLLQDAARKEALQQKQ |
CFI.GSVVRY.QLPADEV..QLLQDAARKE.LQQKQ | |
Retrocopy | CFIQGSVVRYMQLPADEVHKQLLQDAARKEPLQQKQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000002601 | 2 retrocopies | |
Felis catus | ENSFCAG00000004511 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000006832 | 3 retrocopies | |
Mus musculus | ENSMUSG00000007050 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000006371 | 1 retrocopy |
retro_nleu_960 ,
|
Ochotona princeps | ENSOPRG00000003668 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000016461 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000017986 | 3 retrocopies | |
Rattus norvegicus | ENSRNOG00000048725 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000013144 | 1 retrocopy |