Parental gene: | LSM2, ENSPTRG00000017986 |
| Aliases: | None |
| Description: | None |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | 6:32079261..32089715(-) |
>ENSPTRG00000017986
ATGCTCTTCTATTCTTTTTTCAAGTCCCTTGTGGGCAAGGATGTGGTCGTGGAACTAAAGAATGACCTGAGCATCTGTGG
AACCCTCCATTCTGTGGATCAGTATCTCAACATCAAACTAACTGACATCAGTGTCACAGACCCTGAGAAATACCCTCACA
TGTTATCAGTGAAGAACTGCTTCATTCGGGGCTCAGTGGTCCGATACGTGCAGCTGCCAGCAGATGAGGTCGACACACAG
TTGCTACAGGATGCGGCAAGGAAGGAAGCCCTGCAGCAGAAACAGTGA
ATGCTCTTCTATTCTTTTTTCAAGTCCCTTGTGGGCAAGGATGTGGTCGTGGAACTAAAGAATGACCTGAGCATCTGTGG
AACCCTCCATTCTGTGGATCAGTATCTCAACATCAAACTAACTGACATCAGTGTCACAGACCCTGAGAAATACCCTCACA
TGTTATCAGTGAAGAACTGCTTCATTCGGGGCTCAGTGGTCCGATACGTGCAGCTGCCAGCAGATGAGGTCGACACACAG
TTGCTACAGGATGCGGCAAGGAAGGAAGCCCTGCAGCAGAAACAGTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 11 .44 RPM |
| SRP007412_cerebellum | 13 .41 RPM |
| SRP007412_heart | 7 .72 RPM |
| SRP007412_kidney | 15 .53 RPM |
| SRP007412_liver | 8 .74 RPM |
| SRP007412_testis | 9 .27 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000002601 | ortholog_one2one | 2 retrogenes | |
| Felis catus | ENSFCAG00000004511 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000006832 | ortholog_one2one | 3 retrogenes | |
| Mus musculus | ENSMUSG00000007050 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000006371 | ortholog_one2one | 1 retrogene | |
| Ochotona princeps | ENSOPRG00000003668 | ortholog_one2one | 2 retrogenes | |
| Pongo abelii | ENSPPYG00000016461 | ortholog_one2one | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000048725 | ortholog_one2one | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000013144 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_1349 | 81.67 | 62.11 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ptro_2063 | 80.36 | 56.84 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_ptro_2284 | 88.42 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPTRG00000017986 retrocopies