RetrogeneDB ID: | retro_ocun_1075 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 2:169568973..169569543(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RHOA | ||
Ensembl ID: | ENSOCUG00000013323 | ||
Aliases: | None | ||
Description: | ras homolog family member A [Source:HGNC Symbol;Acc:667] |
Percent Identity: | 85.34 % |
Parental protein coverage: | 98.96 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR |
MAAIRKKLV.VGDGACGKTCLLIVFSKD.FPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR | |
Retrocopy | MAAIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR |
Parental | PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVK |
PLSYPDTDVILMCFS.DSPDSLENIPEKW.PEVKHFCPNVPIILV.NKKDLR.DEH.R.ELA.MKQEPV. | |
Retrocopy | PLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVR |
Parental | PEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQARRGKKKSGCL |
...GR.MA.RI.A..Y.ECSAKTK.GVREVFE.ATRAALQ.R.G....GC. | |
Retrocopy | TDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQKRYG-SQNGCI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 72 .63 RPM | 110 .54 RPM |
SRP017611_kidney | 33 .95 RPM | 165 .11 RPM |
SRP017611_liver | 60 .58 RPM | 67 .59 RPM |
Species | RetrogeneDB ID |
---|---|
Rattus norvegicus | retro_rnor_127 |