RetrogeneDB ID: | retro_ocun_1338 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 7:172044974..172045811(+) | ||
Located in intron of: | ENSOCUG00000002211 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000005941 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 71.13 % |
Parental protein coverage: | 82.11 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | AAHPPAGARARSGPLRAMALYHTEERG-RPHSEDYRLFFKNVAGHYISPFHDIPLKVESKEENGIPTKKA |
A.H..AGARARSGPL...AL.HTEE...RPH.ED..LFFKN...HYISPF..IPL.V.SKEENGIPTK.A | |
Retrocopy | ATHLLAGARARSGPLGTVALNHTEECT<RPHAEDCHLFFKNASAHYISPFRGIPLIVDSKEENGIPTKQA |
Parental | RNDEYENLFNMVVEVPRWTNAKMEIATKEPLNPIKQDVKHGKLRYVANIF-PHKGYIWNY-GALPQTWED |
RND.YE.LFNMVVE.PRWTNAKMEIAT.EPLNPIK.DV.H.K...VA..F.P..G....Y..A..QT.E. | |
Retrocopy | RND*YESLFNMVVEAPRWTNAKMEIATEEPLNPIKRDVQHSKPHSVATLF<PSQGLSVDYVPARLQTREI |
Parental | PHQTDESTNCCGDNDPIDVCEIGSKVLTRGEVVHVKILGILALIDEGETDWKLIAINANDPEASKFDDID |
P.....ST.C..DNDP.DVCEIG..VLT..EV.HVKILGILALIDEGETDWKL.A...NDPEASK.DD.. | |
Retrocopy | PNK-QMSTHCRADNDPLDVCEIGPEVLTGREVAHVKILGILALIDEGETDWKLTATSTNDPEASKVDDTA |
Parental | DVK-KFKPGYLEATLNWFKFYKVPDGKPENQFAFNGEFRNKAFALEVIKSTHDHWKALLMKKCDGGAINC |
DV..KFKPGYLEATL.WFKF.K.PDGKPENQFAFN.EFRNKAFAL.VIKS.HDH..ALLMK...GG.I.C | |
Retrocopy | DVR<KFKPGYLEATLTWFKF*KAPDGKPENQFAFNKEFRNKAFALAVIKSIHDHRTALLMKRSSGGTISC |
Parental | TNVQ |
TNVQ | |
Retrocopy | TNVQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 19 .48 RPM |
SRP017611_kidney | 0 .00 RPM | 50 .68 RPM |
SRP017611_liver | 0 .00 RPM | 4 .86 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000010887 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000008731 | 3 retrocopies | |
Echinops telfairi | ENSETEG00000014816 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000017004 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000020635 | 5 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000005941 | 2 retrocopies |
retro_ocun_1338 , retro_ocun_1470,
|
Oryctolagus cuniculus | ENSOCUG00000016001 | 2 retrocopies | |
Ochotona princeps | ENSOPRG00000007086 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000022365 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000003141 | 2 retrocopies |